(log file starts at Sat Feb  7 03:01:46 UTC 2026)

[harvester info] --> Processing annorepo (https://github.com/knaw-huc/annorepo) [Sat Feb  7 03:01:46 UTC 2026]

[harvester info] Git updating cached clone of https://github.com/knaw-huc/annorepo...

[harvester info] Found release v0.8.0

[harvester info] Using 'v0.8.0'

[harvester info] Git reference: v0.8.0

[harvester info] Scanning directory /tmp/codemeta-harvester.cache/annorepo for harvestable resources...

[harvester info] found codemeta-harvest.json for annorepo (md5sum cd48d26b9b02c1b63b057be5369b56c3); values in here take precendence over (override) those in later detection stages

[harvester info] found pom.xml (Java/Maven) for annorepo, converting to codemeta

[harvester info] Looking for license....

[harvester info] Found license Apache-2.0

[harvester info] Parsing MAINTAINERS...

[harvester info] Parsing AUTHORS...

[harvester info] Parsing CONTRIBUTORS...

[harvester info] Getting top contributor from git...

[harvester info] Git top contributor Bram Buitendijk <bram.buitendijk@di.huc.knaw.nl> will be assigned as author (and maintainer) if none are found in the metadata

[harvester info] Extracting last and first commit date from git log....

[harvester info] Date created: 2022-03-24T17:29:49Z+0100, date modified: 2025-08-25T15:58:53Z+0200

[harvester info] Querying Github/GitLab API (https://github.com/knaw-huc/annorepo)

[harvester info] Adding URL for found README: README.md

[harvester info] Found releaseNotes

[harvester info] Querying Zenodo API for DOI (access token provided)...

[harvester info] Looking for TRL information in README.md...

[harvester info] Found TRL https://w3id.org/research-technology-readiness-levels#Stage3Experimental

[harvester info] Looking for repostatus information in README.md...

[harvester info] Found repostatus https://www.repostatus.org/#active

[harvester info] Looking for continuous integration information in README.md...

[harvester info] Looking for documentation links in README.md...

[harvester info] Falling back to git tag (v0.8.0) if no version number is specified...

[harvester info] Inferring repostatus information from git activity (used only as a fallback if not explicitly provided)...

[harvester info] Inferred repostatus https://www.repostatus.org/#active

[harvester info] Looking for repostatus information in README.md in master branch...

[harvester info] Found repostatus (master branch) https://www.repostatus.org/#active

[harvester info] Parsing MAINTAINERS from master branch...

[harvester info] Setting group AnnoRepo

[harvester info] Reconciliating: codemetapy  --baseuri https://tools.clariah.nl --baseuri https://tools.clariah.nl --includecontext --addcontext https://w3id.org/nwo-research-fields --addcontext https://w3id.org/research-technology-readiness-levels --addcontextgraph https://vocabs.dariah.eu/rest/v1/tadirah/data?format=text/turtle --trl --identifier "annorepo" --codeRepository "https://github.com/knaw-huc/annorepo" --validate /etc/software.ttl --released --enrich --textv "Please consult the CLARIAH Software Metadata Requirements at https://github.com/CLARIAH/clariah-plus/blob/main/requirements/software-metadata-requirements.md for an in-depth explanation of any found problems" -O /tmp/out/annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-version.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-repostatus.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/90-authors.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/43-releasenotes.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/41-readme.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/40-gitapi.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/39-gitdate.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/32-contributors.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/31-authors.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/30-maintainers.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/29-license.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/21-java.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/11-trl.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/11-repostatus.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/10-harvest.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/05-repostatus.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/05-maintainers.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/04-applicationSuite.annorepo.codemeta.json 

-- begin log --

/usr/lib/python3.12/site-packages/pyshacl/extras/__init__.py:6: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.

  import pkg_resources

Passed 18 files/sources but specified 0 input types! Automatically guessing types...

Detected input types: [('/tmp/codemeta-harvester.cache//tmp/99-version.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/99-repostatus.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/90-authors.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/43-releasenotes.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/41-readme.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/40-gitapi.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/39-gitdate.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/32-contributors.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/31-authors.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/30-maintainers.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/29-license.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/21-java.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/11-trl.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/11-repostatus.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/10-harvest.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/05-repostatus.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/05-maintainers.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/04-applicationSuite.annorepo.codemeta.json', 'json')]

Adding to contextgraph: /tmp/turtle

Initial URI automatically generated, may be overriden later: https://tools.clariah.nl/annorepo

Processing source #1 of 18

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-version.annorepo.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/annorepo

[CODEMETA COMPOSITION (https://tools.clariah.nl/annorepo)] processed 1 new triples, total is now 2

Processing source #2 of 18

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-repostatus.annorepo.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/annorepo

[CODEMETA COMPOSITION (https://tools.clariah.nl/annorepo)] processed 1 new triples, total is now 3

Processing source #3 of 18

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/90-authors.annorepo.codemeta.json

    Found main resource with URI https://tools.clariah.nl/annorepo.topcontributor/snapshot

    Injected (possibly temporary) URI https://tools.clariah.nl/annorepo

[CODEMETA COMPOSITION (https://tools.clariah.nl/annorepo)] processed 8 new triples, total is now 10

Processing source #4 of 18

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/43-releasenotes.annorepo.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/annorepo

[CODEMETA COMPOSITION (https://tools.clariah.nl/annorepo)] processed 2 new triples, total is now 12

Processing source #5 of 18

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/41-readme.annorepo.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/annorepo

[CODEMETA COMPOSITION (https://tools.clariah.nl/annorepo)] processed 1 new triples, total is now 13

Processing source #6 of 18

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/40-gitapi.annorepo.codemeta.json

    Found main resource with URI https://tools.clariah.nl/annorepo/snapshot

    Injected (possibly temporary) URI https://tools.clariah.nl/annorepo

[CODEMETA COMPOSITION (https://tools.clariah.nl/annorepo)] processed 16 new triples, total is now 28

Processing source #7 of 18

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/39-gitdate.annorepo.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/annorepo

[CODEMETA COMPOSITION (https://tools.clariah.nl/annorepo)] overriding old http://schema.org/dateCreated (2022-03-24T16:29:48Z -> 2022-03-24T17:29:49Z+0100)

[CODEMETA COMPOSITION (https://tools.clariah.nl/annorepo)] overriding old http://schema.org/dateModified (2026-02-06T09:03:49Z -> 2025-08-25T15:58:53Z+0200)

[CODEMETA COMPOSITION (https://tools.clariah.nl/annorepo)] processed 2 new triples, total is now 28

Processing source #8 of 18

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/32-contributors.annorepo.codemeta.json

    Found main resource with URI https://tools.clariah.nl/contributors/snapshot

    Injected (possibly temporary) URI https://tools.clariah.nl/annorepo

[CODEMETA COMPOSITION (https://tools.clariah.nl/annorepo)] processed 14 new triples, total is now 37

Processing source #9 of 18

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/31-authors.annorepo.codemeta.json

    Found main resource with URI https://tools.clariah.nl/authors/snapshot

    Injected (possibly temporary) URI https://tools.clariah.nl/annorepo

[CODEMETA COMPOSITION (https://tools.clariah.nl/annorepo)] processed 8 new triples, total is now 37

Processing source #10 of 18

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/30-maintainers.annorepo.codemeta.json

    Found main resource with URI https://tools.clariah.nl/maintainers/snapshot

    Injected (possibly temporary) URI https://tools.clariah.nl/annorepo

[CODEMETA COMPOSITION (https://tools.clariah.nl/annorepo)] processed 6 new triples, total is now 38

Processing source #11 of 18

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/29-license.annorepo.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/annorepo

[CODEMETA COMPOSITION (https://tools.clariah.nl/annorepo)] overriding old http://schema.org/license (http://spdx.org/licenses/Apache-2.0 -> Apache-2.0)

[CODEMETA CORRECTION (https://tools.clariah.nl/annorepo)] automatically converting license to spdx URI

[CODEMETA COMPOSITION (https://tools.clariah.nl/annorepo)] processed 1 new triples, total is now 38

Processing source #12 of 18

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/21-java.annorepo.codemeta.json

    Found main resource with URI https://tools.clariah.nl/io.github.knaw-huc.annorepo/0.8.0

    Injected (possibly temporary) URI https://tools.clariah.nl/annorepo

[CODEMETA COMPOSITION (io.github.knaw-huc.annorepo)] overriding old http://schema.org/author (https://tools.clariah.nl/stub/H-6a1c041a41fb9a40 -> https://tools.clariah.nl/stub/H0747825497dddd3a)

[CODEMETA COMPOSITION (io.github.knaw-huc.annorepo)] overriding old http://schema.org/codeRepository (https://github.com/knaw-huc/annorepo -> http://github.com/knaw-huc/annorepo/tree/main)

[CODEMETA COMPOSITION (io.github.knaw-huc.annorepo)] overriding old http://schema.org/description (Annotation Repository -> Implementation of W3C Web Annotation Protocol (root project))

[CODEMETA COMPOSITION (io.github.knaw-huc.annorepo)] overriding old http://schema.org/name (annorepo -> AnnoRepo)

[CODEMETA COMPOSITION (io.github.knaw-huc.annorepo)] overriding old http://schema.org/producer (https://tools.clariah.nl/org/knaw-humanities-cluster -> https://tools.clariah.nl/org/huc-di)

[CODEMETA COMPOSITION (io.github.knaw-huc.annorepo)] overriding old http://schema.org/version (v0.8.0 -> 0.8.0)

[CODEMETA COMPOSITION (io.github.knaw-huc.annorepo)] processed 26 new triples, total is now 55

Processing source #13 of 18

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/11-trl.annorepo.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/annorepo

[CODEMETA COMPOSITION (io.github.knaw-huc.annorepo)] processed 1 new triples, total is now 56

Processing source #14 of 18

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/11-repostatus.annorepo.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/annorepo

[CODEMETA COMPOSITION (io.github.knaw-huc.annorepo)] processed 1 new triples, total is now 56

Processing source #15 of 18

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/10-harvest.annorepo.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/annorepo

[CODEMETA 2 TO 3] Updating contIntegration -> continuousIntegration

[CODEMETA 2 TO 3] Updating targetProduct -> isSourceCodeOf

[CODEMETA COMPOSITION (io.github.knaw-huc.annorepo)] overriding old http://schema.org/programmingLanguage (Java -> Kotlin)

[CODEMETA COMPOSITION (io.github.knaw-huc.annorepo)] overriding old http://schema.org/producer (https://tools.clariah.nl/org/huc-di -> https://huc.knaw.nl)

[CODEMETA COMPOSITION (io.github.knaw-huc.annorepo)] processed 27 new triples, total is now 80

Processing source #16 of 18

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/05-repostatus.annorepo.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/annorepo

[CODEMETA COMPOSITION (io.github.knaw-huc.annorepo)] processed 1 new triples, total is now 80

Processing source #17 of 18

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/05-maintainers.annorepo.codemeta.json

    Found main resource with URI https://tools.clariah.nl/maintainers/snapshot

    Injected (possibly temporary) URI https://tools.clariah.nl/annorepo

[CODEMETA COMPOSITION (io.github.knaw-huc.annorepo)] processed 6 new triples, total is now 80

Processing source #18 of 18

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/04-applicationSuite.annorepo.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/annorepo

[CODEMETA COMPOSITION (io.github.knaw-huc.annorepo)] processed 1 new triples, total is now 81

Remapping URI to (possibly) new identifier and version component: https://tools.clariah.nl/annorepo -> https://tools.clariah.nl/annorepo/0.8.0

[CODEMETA VALIDATION (annorepo)] done

VALIDATION https://tools.clariah.nl/annorepo/0.8.0 #1: Info: Reference publications *SHOULD* be expressed, if any (This is missing in the metadata)

-- end log --

[harvester info] Output written to /tmp/out/annorepo.codemeta.json

[harvester info] <-- Finished processing annorepo (https://github.com/knaw-huc/annorepo) [Sat Feb  7 03:02:19 UTC 2026]