(log file starts at Wed Jun 25 03:33:32 UTC 2025)

[harvester info] --> Processing chamd (https://github.com/UUDigitalHumanitieslab/chamd) [Wed Jun 25 03:33:32 UTC 2025]

[harvester info] Git updating cached clone of https://github.com/UUDigitalHumanitieslab/chamd...

[harvester info] Found release 0.5.12

[harvester info] Using '0.5.12'

[harvester info] Git reference: 0.5.12

[harvester info] Scanning directory /tmp/codemeta-harvester.cache/chamd for harvestable resources...

[harvester info] found CITATION.cff for chamd, converting to codemeta

[harvester info] found python setup for chamd, converting to codemeta

[harvester info] Looking for license....

[harvester info] Found license MIT

[harvester info] Getting contributors from git...

[harvester info] Getting top contributor from git...

[harvester info] Git top contributor Jelte van Boheemen <j.vanboheemen@uu.nl> will be assigned as author (and maintainer) if none are found in the metadata

[harvester info] Extracting last and first commit date from git log....

[harvester info] Date created: 2017-03-15T17:11:41Z+0100, date modified: 2024-03-13T11:22:57Z+0100

[harvester info] Querying Github/GitLab API (https://github.com/UUDigitalHumanitieslab/chamd)

[harvester info] Adding URL for found README: README.md

[harvester info] Found releaseNotes

[harvester info] Querying Zenodo API for DOI (access token provided)...

[harvester info] Looking for TRL information in README.md...

[harvester info] Looking for repostatus information in README.md...

[harvester info] Looking for continuous integration information in README.md...

[harvester info] Found CI https://github.com/UUDigitalHumanitieslab/chamd/actions/

[harvester info] Looking for documentation links in README.md...

[harvester info] Falling back to git tag (0.5.12) if no version number is specified...

[harvester info] Inferring repostatus information from git activity (used only as a fallback if not explicitly provided)...

[harvester info] Inferred repostatus https://www.repostatus.org/#inactive

[harvester info] Looking for repostatus information in README.md in master branch...

[harvester info] Reconciliating: codemetapy  --baseuri https://tools.clariah.nl --baseuri https://tools.clariah.nl --includecontext --addcontext https://w3id.org/nwo-research-fields --addcontext https://w3id.org/research-technology-readiness-levels --addcontextgraph https://vocabs.dariah.eu/rest/v1/tadirah/data?format=text/turtle --trl --identifier "chamd" --codeRepository "https://github.com/UUDigitalHumanitieslab/chamd" --validate /etc/software.ttl --released --enrich --textv "Please consult the CLARIAH Software Metadata Requirements at https://github.com/CLARIAH/clariah-plus/blob/main/requirements/software-metadata-requirements.md for an in-depth explanation of any found problems" -O /tmp/out/chamd.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-version.chamd.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-repostatus.chamd.codemeta.json /tmp/codemeta-harvester.cache//tmp/90-authors.chamd.codemeta.json /tmp/codemeta-harvester.cache//tmp/43-releasenotes.chamd.codemeta.json /tmp/codemeta-harvester.cache//tmp/41-readme.chamd.codemeta.json /tmp/codemeta-harvester.cache//tmp/40-gitapi.chamd.codemeta.json /tmp/codemeta-harvester.cache//tmp/39-gitdate.chamd.codemeta.json /tmp/codemeta-harvester.cache//tmp/32-contributors.chamd.codemeta.json /tmp/codemeta-harvester.cache//tmp/29-license.chamd.codemeta.json /tmp/codemeta-harvester.cache//tmp/20-python.chamd.codemeta.json /tmp/codemeta-harvester.cache//tmp/12-citationcff.chamd.codemeta.json /tmp/codemeta-harvester.cache//tmp/12-ci.chamd.codemeta.json 

-- begin log --

Passed 12 files/sources but specified 0 input types! Automatically guessing types...

Detected input types: [('/tmp/codemeta-harvester.cache//tmp/99-version.chamd.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/99-repostatus.chamd.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/90-authors.chamd.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/43-releasenotes.chamd.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/41-readme.chamd.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/40-gitapi.chamd.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/39-gitdate.chamd.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/32-contributors.chamd.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/29-license.chamd.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/20-python.chamd.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/12-citationcff.chamd.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/12-ci.chamd.codemeta.json', 'json')]

Adding to contextgraph: /tmp/turtle

Initial URI automatically generated, may be overriden later: https://tools.clariah.nl/chamd

Processing source #1 of 12

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-version.chamd.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/chamd

[CODEMETA COMPOSITION (https://tools.clariah.nl/chamd)] processed 1 new triples, total is now 2

Processing source #2 of 12

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-repostatus.chamd.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/chamd

[CODEMETA COMPOSITION (https://tools.clariah.nl/chamd)] processed 1 new triples, total is now 3

Processing source #3 of 12

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/90-authors.chamd.codemeta.json

    Found main resource with URI https://tools.clariah.nl/chamd.topcontributor/snapshot

    Injected (possibly temporary) URI https://tools.clariah.nl/chamd

Traceback (most recent call last):

  File "/usr/lib/python3.12/urllib/request.py", line 1344, in do_open

    h.request(req.get_method(), req.selector, req.data, headers,

  File "/usr/lib/python3.12/http/client.py", line 1338, in request

    self._send_request(method, url, body, headers, encode_chunked)

  File "/usr/lib/python3.12/http/client.py", line 1384, in _send_request

    self.endheaders(body, encode_chunked=encode_chunked)

  File "/usr/lib/python3.12/http/client.py", line 1333, in endheaders

    self._send_output(message_body, encode_chunked=encode_chunked)

  File "/usr/lib/python3.12/http/client.py", line 1093, in _send_output

    self.send(msg)

  File "/usr/lib/python3.12/http/client.py", line 1037, in send

    self.connect()

  File "/usr/lib/python3.12/http/client.py", line 1472, in connect

    super().connect()

  File "/usr/lib/python3.12/http/client.py", line 1003, in connect

    self.sock = self._create_connection(

                ^^^^^^^^^^^^^^^^^^^^^^^^

  File "/usr/lib/python3.12/socket.py", line 865, in create_connection

    raise exceptions[0]

  File "/usr/lib/python3.12/socket.py", line 850, in create_connection

    sock.connect(sa)

OSError: [Errno 99] Address not available



During handling of the above exception, another exception occurred:



Traceback (most recent call last):

  File "/usr/bin/codemetapy", line 8, in <module>

    sys.exit(main())

             ^^^^^^

  File "/usr/lib/python3.12/site-packages/codemeta/codemeta.py", line 339, in main

    g, res, args, contextgraph = build(**args.__dict__)

                                 ^^^^^^^^^^^^^^^^^^^^^^

  File "/usr/lib/python3.12/site-packages/codemeta/codemeta.py", line 683, in build

    founduri = codemeta.parsers.jsonld.parse_jsonld(newgraph, res, f, args)

               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

  File "/usr/lib/python3.12/site-packages/codemeta/parsers/jsonld.py", line 80, in parse_jsonld

    return parse_jsonld_data(g, res, data, args)

           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

  File "/usr/lib/python3.12/site-packages/codemeta/parsers/jsonld.py", line 260, in parse_jsonld_data

    g.parse(

  File "/usr/lib/python3.12/site-packages/rdflib/graph.py", line 1494, in parse

    parser.parse(source, self, **args)

  File "/usr/lib/python3.12/site-packages/rdflib/plugins/parsers/jsonld.py", line 119, in parse

    to_rdf(data, conj_sink, base, context_data, version, generalized_rdf)

  File "/usr/lib/python3.12/site-packages/rdflib/plugins/parsers/jsonld.py", line 138, in to_rdf

    return parser.parse(data, context, dataset)

           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

  File "/usr/lib/python3.12/site-packages/rdflib/plugins/parsers/jsonld.py", line 160, in parse

    context.load(local_context, context.base)

  File "/usr/lib/python3.12/site-packages/rdflib/plugins/shared/jsonld/context.py", line 401, in load

    self._prep_sources(base, source, sources, referenced_contexts)

  File "/usr/lib/python3.12/site-packages/rdflib/plugins/shared/jsonld/context.py", line 430, in _prep_sources

    new_ctx = self._fetch_context(

              ^^^^^^^^^^^^^^^^^^^^

  File "/usr/lib/python3.12/site-packages/rdflib/plugins/shared/jsonld/context.py", line 472, in _fetch_context

    source = source_to_json(source_url)  # type: ignore[assignment]

             ^^^^^^^^^^^^^^^^^^^^^^^^^^

  File "/usr/lib/python3.12/site-packages/rdflib/plugins/shared/jsonld/util.py", line 44, in source_to_json

    source = create_input_source(source, format="json-ld")

             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

  File "/usr/lib/python3.12/site-packages/rdflib/parser.py", line 416, in create_input_source

    ) = _create_input_source_from_location(

        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

  File "/usr/lib/python3.12/site-packages/rdflib/parser.py", line 478, in _create_input_source_from_location

    input_source = URLInputSource(absolute_location, format)

                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

  File "/usr/lib/python3.12/site-packages/rdflib/parser.py", line 285, in __init__

    response: addinfourl = _urlopen(req)

                           ^^^^^^^^^^^^^

  File "/usr/lib/python3.12/site-packages/rdflib/parser.py", line 272, in _urlopen

    return urlopen(req)

           ^^^^^^^^^^^^

  File "/usr/lib/python3.12/urllib/request.py", line 215, in urlopen

    return opener.open(url, data, timeout)

           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

  File "/usr/lib/python3.12/urllib/request.py", line 515, in open

    response = self._open(req, data)

               ^^^^^^^^^^^^^^^^^^^^^

  File "/usr/lib/python3.12/urllib/request.py", line 532, in _open

    result = self._call_chain(self.handle_open, protocol, protocol +

             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

  File "/usr/lib/python3.12/urllib/request.py", line 492, in _call_chain

    result = func(*args)

             ^^^^^^^^^^^

  File "/usr/lib/python3.12/urllib/request.py", line 1392, in https_open

    return self.do_open(http.client.HTTPSConnection, req,

           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

  File "/usr/lib/python3.12/urllib/request.py", line 1347, in do_open

    raise URLError(err)

urllib.error.URLError: <urlopen error [Errno 99] Address not available>

-- end log --

[harvester error] Failed to consolidate metadata chamd

[harvester info] <-- Finished processing chamd (https://github.com/UUDigitalHumanitieslab/chamd) [Wed Jun 25 03:35:50 UTC 2025]