(log file starts at Mon Dec  9 03:05:08 UTC 2024)

[harvester info] --> Processing deepfrog (https://github.com/proycon/deepfrog/) [Mon Dec  9 03:05:08 UTC 2024]

[harvester info] Git updating cached clone of https://github.com/proycon/deepfrog/...

[harvester info] Found release v0.2.1

[harvester info] Using 'v0.2.1'

[harvester info] Git reference: v0.2.1

[harvester info] Scanning directory /tmp/codemeta-harvester.cache/deepfrog for harvestable resources...

[harvester info] found Cargo.toml (rust) for deepfrog, converting to codemeta

[harvester info] Looking for license....

[harvester info] Found license GPL-3.0-only

[harvester info] Getting contributors from git...

[harvester info] No git contributors found

[harvester info] Getting top contributor from git...

[harvester info] Git top contributor  will be assigned as author (and maintainer) if none are found in the metadata

[harvester info] Extracting last and first commit date from git log....

[harvester info] Date created: 2020-02-08T12:37:19Z+0100, date modified: 2021-04-11T15:29:58Z+0200

[harvester info] Querying Github/GitLab API (https://github.com/proycon/deepfrog/)

[harvester info] Adding URL for found README: README.md

[harvester info] Found releaseNotes

[harvester info] Querying Zenodo API for DOI (access token provided)...

[harvester info] Looking for TRL information in README.md...

[harvester info] Mapping repostatus https://www.repostatus.org/#wip to trl:Stage3Experimental

[harvester info] Looking for repostatus information in README.md...

[harvester info] Found repostatus https://www.repostatus.org/#wip

[harvester info] Looking for continuous integration information in README.md...

[harvester info] Looking for documentation links in README.md...

[harvester info] Falling back to git tag (v0.2.1) if no version number is specified...

[harvester info] Inferring repostatus information from git activity (used only as a fallback if not explicitly provided)...

[harvester info] Inferred repostatus https://www.repostatus.org/#inactive

[harvester info] Looking for repostatus information in README.md in master branch...

[harvester info] Found repostatus (master branch) https://www.repostatus.org/#suspended

[harvester info] Reconciliating: codemetapy  --baseuri https://tools.clariah.nl --baseuri https://tools.clariah.nl --includecontext --addcontext https://w3id.org/nwo-research-fields --addcontext https://w3id.org/research-technology-readiness-levels --addcontextgraph https://vocabs.dariah.eu/rest/v1/tadirah/data?format=text/turtle --trl --identifier "deepfrog" --codeRepository "https://github.com/proycon/deepfrog/" --validate /etc/software.ttl --released --enrich --textv "Please consult the CLARIAH Software Metadata Requirements at https://github.com/CLARIAH/clariah-plus/blob/main/requirements/software-metadata-requirements.md for an in-depth explanation of any found problems" -O /tmp/out/deepfrog.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-version.deepfrog.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-repostatus.deepfrog.codemeta.json /tmp/codemeta-harvester.cache//tmp/90-authors.deepfrog.codemeta.json /tmp/codemeta-harvester.cache//tmp/43-releasenotes.deepfrog.codemeta.json /tmp/codemeta-harvester.cache//tmp/41-readme.deepfrog.codemeta.json /tmp/codemeta-harvester.cache//tmp/40-gitapi.deepfrog.codemeta.json /tmp/codemeta-harvester.cache//tmp/39-gitdate.deepfrog.codemeta.json /tmp/codemeta-harvester.cache//tmp/29-license.deepfrog.codemeta.json /tmp/codemeta-harvester.cache//tmp/23-rust.deepfrog.codemeta.json /tmp/codemeta-harvester.cache//tmp/11-trl.deepfrog.codemeta.json /tmp/codemeta-harvester.cache//tmp/11-repostatus.deepfrog.codemeta.json /tmp/codemeta-harvester.cache//tmp/05-repostatus.deepfrog.codemeta.json 

-- begin log --

Passed 12 files/sources but specified 0 input types! Automatically guessing types...

Detected input types: [('/tmp/codemeta-harvester.cache//tmp/99-version.deepfrog.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/99-repostatus.deepfrog.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/90-authors.deepfrog.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/43-releasenotes.deepfrog.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/41-readme.deepfrog.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/40-gitapi.deepfrog.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/39-gitdate.deepfrog.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/29-license.deepfrog.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/23-rust.deepfrog.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/11-trl.deepfrog.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/11-repostatus.deepfrog.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/05-repostatus.deepfrog.codemeta.json', 'json')]

Adding to contextgraph: /tmp/turtle

Initial URI automatically generated, may be overriden later: https://tools.clariah.nl/deepfrog

Processing source #1 of 12

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-version.deepfrog.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/deepfrog

[CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] processed 1 new triples, total is now 2

Processing source #2 of 12

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-repostatus.deepfrog.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/deepfrog

[CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] processed 1 new triples, total is now 3

Processing source #3 of 12

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/90-authors.deepfrog.codemeta.json

    Found main resource with URI https://tools.clariah.nl/deepfrog.topcontributor/snapshot

    Injected (possibly temporary) URI https://tools.clariah.nl/deepfrog

[CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] processed 1 new triples, total is now 3

Processing source #4 of 12

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/43-releasenotes.deepfrog.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/deepfrog

[CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] processed 2 new triples, total is now 5

Processing source #5 of 12

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/41-readme.deepfrog.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/deepfrog

[CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] processed 1 new triples, total is now 6

Processing source #6 of 12

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/40-gitapi.deepfrog.codemeta.json

    Found main resource with URI https://tools.clariah.nl/deepfrog/snapshot

    Injected (possibly temporary) URI https://tools.clariah.nl/deepfrog

[CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] processed 28 new triples, total is now 33

Processing source #7 of 12

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/39-gitdate.deepfrog.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/deepfrog

[CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] overriding old http://schema.org/dateCreated (2020-02-12T12:28:13Z -> 2020-02-08T12:37:19Z+0100)

[CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] overriding old http://schema.org/dateModified (2023-03-24T23:53:13Z -> 2021-04-11T15:29:58Z+0200)

[CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] processed 2 new triples, total is now 33

Processing source #8 of 12

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/29-license.deepfrog.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/deepfrog

[CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] overriding old http://schema.org/license (http://spdx.org/licenses/GPL-3.0-only -> GPL-3.0-only)

[CODEMETA CORRECTION (https://tools.clariah.nl/deepfrog)] automatically converting license to spdx URI

[CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] processed 1 new triples, total is now 33

Processing source #9 of 12

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/23-rust.deepfrog.codemeta.json

    Found main resource with URI https://tools.clariah.nl/cargo.toml/0.2.1

    Injected (possibly temporary) URI https://tools.clariah.nl/deepfrog

[CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] overriding old http://schema.org/author (https://tools.clariah.nl/stub/H-3b3b1c606e0f897c -> https://tools.clariah.nl/stub/H382b403acce072cb)

[CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] overriding old http://schema.org/description (An NLP-suite powered by deep learning -> A deep learning NLP suite (PoS,lemmatiser,NER) with FoLiA XML support)

[CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] overriding old http://schema.org/keywords (dutch -> annotation)

[CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] overriding old http://schema.org/keywords (folia -> annotation)

[CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] overriding old http://schema.org/keywords (deep-learning -> annotation)

[CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] overriding old http://schema.org/keywords (transformers -> annotation)

[CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] overriding old http://schema.org/keywords (frog -> annotation)

[CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] overriding old http://schema.org/keywords (deep-neural-networks -> annotation)

[CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] overriding old http://schema.org/license (http://spdx.org/licenses/GPL-3.0-only -> http://spdx.org/licenses/GPL-3.0-or-later)

[CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] overriding old http://schema.org/version (v0.2.1 -> 0.2.1)

[CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] processed 63 new triples, total is now 78

Processing source #10 of 12

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/11-trl.deepfrog.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/deepfrog

[CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] processed 1 new triples, total is now 79

Processing source #11 of 12

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/11-repostatus.deepfrog.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/deepfrog

[CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] overriding old https://codemeta.github.io/terms/developmentStatus (https://www.repostatus.org/#inactive -> https://www.repostatus.org/#wip)

[CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] processed 1 new triples, total is now 79

Processing source #12 of 12

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/05-repostatus.deepfrog.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/deepfrog

[CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] overriding old https://codemeta.github.io/terms/developmentStatus (https://www.repostatus.org/#wip -> https://www.repostatus.org/#suspended)

[CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] processed 1 new triples, total is now 79

Remapping URI to (possibly) new identifier and version component: https://tools.clariah.nl/deepfrog -> https://tools.clariah.nl/deepfrog/0.2.1

[CODEMETA VALIDATION (deepfrog)] done

[CODEMETA ENRICHMENT (deepfrog)] adding author https://tools.clariah.nl/person/maarten-van-gompel as contributor

[CODEMETA ENRICHMENT (deepfrog)] adding affiliation(s) of first author as producer

VALIDATION https://tools.clariah.nl/deepfrog/0.2.1 #1: Info: Software source code *SHOULD* link to a continuous integration service that builds the software and runs the software's tests (This is missing in the metadata)

VALIDATION https://tools.clariah.nl/deepfrog/0.2.1 #2: Info: An interface type *SHOULD* be expressed: Software source code should define one or more target products that are the resulting software applications offering specific interfaces (This is missing in the metadata)

VALIDATION https://tools.clariah.nl/deepfrog/0.2.1 #3: Warning: Documentation *SHOULD* be expressed (The metadata does express this currently, but something is wrong in the way it is expressed. Is the type/class valid?)

VALIDATION https://tools.clariah.nl/deepfrog/0.2.1 #4: Info: Reference publications *SHOULD* be expressed, if any (This is missing in the metadata)

VALIDATION https://tools.clariah.nl/deepfrog/0.2.1 #5: Info: The funder *SHOULD* be acknowledged (This is missing in the metadata)

VALIDATION https://tools.clariah.nl/deepfrog/0.2.1 #6: Info: A research domain *SHOULD* be expressed as a category using the NWO Research Fields vocabulary, if applicable (This is missing in the metadata)

VALIDATION https://tools.clariah.nl/deepfrog/0.2.1 #7: Info: A research activity *SHOULD* be expressed as a category using the TaDiRaH vocabulary (This is missing in the metadata)

-- end log --

[harvester info] Output written to /tmp/out/deepfrog.codemeta.json

[harvester info] <-- Finished processing deepfrog (https://github.com/proycon/deepfrog/) [Mon Dec  9 03:05:20 UTC 2024]