(log file starts at Sat Jan 17 03:09:14 UTC 2026)

[harvester info] --> Processing dexter (https://github.com/knaw-huc/dexter) [Sat Jan 17 03:09:14 UTC 2026]

[harvester info] Git updating cached clone of https://github.com/knaw-huc/dexter...

[harvester info] Found release v0.15.0

[harvester info] Using 'v0.15.0'

[harvester info] Git reference: v0.15.0

[harvester info] Scanning directory /tmp/codemeta-harvester.cache/dexter for harvestable resources...

[harvester info] Looking for license....

[harvester info] Found license MIT

[harvester info] Getting contributors from git...

[harvester info] Getting top contributor from git...

[harvester info] Git top contributor BasLee <basleenknegt@gmail.com> will be assigned as author (and maintainer) if none are found in the metadata

[harvester info] Extracting last and first commit date from git log....

[harvester info] Date created: 2022-07-19T09:05:41Z+0200, date modified: 2024-05-22T11:15:55Z+0200

[harvester info] Querying Github/GitLab API (https://github.com/knaw-huc/dexter)

[harvester info] Adding URL for found README: README.md

[harvester info] Found releaseNotes

[harvester info] Querying Zenodo API for DOI (access token provided)...

[harvester info] Looking for TRL information in README.md...

[harvester info] Looking for repostatus information in README.md...

[harvester info] Looking for continuous integration information in README.md...

[harvester info] Looking for documentation links in README.md...

[harvester info] Falling back to git tag (v0.15.0) if no version number is specified...

[harvester info] Inferring repostatus information from git activity (used only as a fallback if not explicitly provided)...

[harvester info] Inferred repostatus https://www.repostatus.org/#active

[harvester info] Looking for repostatus information in README.md in master branch...

[harvester info] Reconciliating: codemetapy  --baseuri https://tools.clariah.nl --baseuri https://tools.clariah.nl --includecontext --addcontext https://w3id.org/nwo-research-fields --addcontext https://w3id.org/research-technology-readiness-levels --addcontextgraph https://vocabs.dariah.eu/rest/v1/tadirah/data?format=text/turtle --trl --identifier "dexter" --codeRepository "https://github.com/knaw-huc/dexter" --validate /etc/software.ttl --released --enrich --textv "Please consult the CLARIAH Software Metadata Requirements at https://github.com/CLARIAH/clariah-plus/blob/main/requirements/software-metadata-requirements.md for an in-depth explanation of any found problems" -O /tmp/out/dexter.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-version.dexter.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-repostatus.dexter.codemeta.json /tmp/codemeta-harvester.cache//tmp/90-authors.dexter.codemeta.json /tmp/codemeta-harvester.cache//tmp/43-releasenotes.dexter.codemeta.json /tmp/codemeta-harvester.cache//tmp/41-readme.dexter.codemeta.json /tmp/codemeta-harvester.cache//tmp/40-gitapi.dexter.codemeta.json /tmp/codemeta-harvester.cache//tmp/39-gitdate.dexter.codemeta.json /tmp/codemeta-harvester.cache//tmp/32-contributors.dexter.codemeta.json /tmp/codemeta-harvester.cache//tmp/29-license.dexter.codemeta.json 

-- begin log --

/usr/lib/python3.12/site-packages/pyshacl/extras/__init__.py:6: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.

  import pkg_resources

Passed 9 files/sources but specified 0 input types! Automatically guessing types...

Detected input types: [('/tmp/codemeta-harvester.cache//tmp/99-version.dexter.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/99-repostatus.dexter.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/90-authors.dexter.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/43-releasenotes.dexter.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/41-readme.dexter.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/40-gitapi.dexter.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/39-gitdate.dexter.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/32-contributors.dexter.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/29-license.dexter.codemeta.json', 'json')]

Adding to contextgraph: /tmp/turtle

Initial URI automatically generated, may be overriden later: https://tools.clariah.nl/dexter

Processing source #1 of 9

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-version.dexter.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/dexter

[CODEMETA COMPOSITION (https://tools.clariah.nl/dexter)] processed 1 new triples, total is now 2

Processing source #2 of 9

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-repostatus.dexter.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/dexter

[CODEMETA COMPOSITION (https://tools.clariah.nl/dexter)] processed 1 new triples, total is now 3

Processing source #3 of 9

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/90-authors.dexter.codemeta.json

    Found main resource with URI https://tools.clariah.nl/dexter.topcontributor/snapshot

    Injected (possibly temporary) URI https://tools.clariah.nl/dexter

[CODEMETA COMPOSITION (https://tools.clariah.nl/dexter)] processed 8 new triples, total is now 10

Processing source #4 of 9

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/43-releasenotes.dexter.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/dexter

[CODEMETA COMPOSITION (https://tools.clariah.nl/dexter)] processed 2 new triples, total is now 12

Processing source #5 of 9

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/41-readme.dexter.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/dexter

[CODEMETA COMPOSITION (https://tools.clariah.nl/dexter)] processed 1 new triples, total is now 13

Processing source #6 of 9

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/40-gitapi.dexter.codemeta.json

    Found main resource with URI https://tools.clariah.nl/dexter/snapshot

    Injected (possibly temporary) URI https://tools.clariah.nl/dexter

[CODEMETA COMPOSITION (https://tools.clariah.nl/dexter)] processed 13 new triples, total is now 25

Processing source #7 of 9

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/39-gitdate.dexter.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/dexter

[CODEMETA COMPOSITION (https://tools.clariah.nl/dexter)] overriding old http://schema.org/dateCreated (2022-07-19T07:05:41Z -> 2022-07-19T09:05:41Z+0200)

[CODEMETA COMPOSITION (https://tools.clariah.nl/dexter)] overriding old http://schema.org/dateModified (2026-01-14T08:50:04Z -> 2024-05-22T11:15:55Z+0200)

[CODEMETA COMPOSITION (https://tools.clariah.nl/dexter)] processed 2 new triples, total is now 25

Processing source #8 of 9

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/32-contributors.dexter.codemeta.json

    Found main resource with URI https://tools.clariah.nl/dexter.contributors/snapshot

    Injected (possibly temporary) URI https://tools.clariah.nl/dexter

[CODEMETA COMPOSITION (https://tools.clariah.nl/dexter)] processed 26 new triples, total is now 46

Processing source #9 of 9

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/29-license.dexter.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/dexter

[CODEMETA COMPOSITION (https://tools.clariah.nl/dexter)] overriding old http://schema.org/license (http://spdx.org/licenses/MIT -> MIT)

[CODEMETA CORRECTION (https://tools.clariah.nl/dexter)] automatically converting license to spdx URI

[CODEMETA COMPOSITION (https://tools.clariah.nl/dexter)] processed 1 new triples, total is now 46

Remapping URI to (possibly) new identifier and version component: https://tools.clariah.nl/dexter -> https://tools.clariah.nl/dexter/v0.15.0

[CODEMETA VALIDATION (dexter)] done

[CODEMETA ENRICHMENT (dexter)] considering first author as maintainer

VALIDATION https://tools.clariah.nl/dexter/v0.15.0 #1: Info: Software source code *SHOULD* link to a continuous integration service that builds the software and runs the software's tests (This is missing in the metadata)

VALIDATION https://tools.clariah.nl/dexter/v0.15.0 #2: Info: Software source code *MAY* express the programming language(s) used (This is missing in the metadata)

VALIDATION https://tools.clariah.nl/dexter/v0.15.0 #3: Info: An interface type *SHOULD* be expressed: Software source code should define one or more target products that are the resulting software applications offering specific interfaces (This is missing in the metadata)

VALIDATION https://tools.clariah.nl/dexter/v0.15.0 #4: Warning: Documentation *SHOULD* be expressed (This is missing in the metadata)

VALIDATION https://tools.clariah.nl/dexter/v0.15.0 #5: Info: Reference publications *SHOULD* be expressed, if any (This is missing in the metadata)

VALIDATION https://tools.clariah.nl/dexter/v0.15.0 #6: Info: The funder *SHOULD* be acknowledged (This is missing in the metadata)

VALIDATION https://tools.clariah.nl/dexter/v0.15.0 #7: Info: The technology readiness level *SHOULD* be expressed (This is missing in the metadata)

-- end log --

[harvester info] Output written to /tmp/out/dexter.codemeta.json

[harvester info] <-- Finished processing dexter (https://github.com/knaw-huc/dexter) [Sat Jan 17 03:09:36 UTC 2026]