(log file starts at Wed Sep 18 03:01:09 UTC 2024) [harvester info] --> Processing annorepo (https://github.com/knaw-huc/annorepo) [Wed Sep 18 03:01:09 UTC 2024] [harvester info] Git updating cached clone of https://github.com/knaw-huc/annorepo... [harvester info] Found release v0.6.3 [harvester info] Using 'v0.6.3' [harvester info] Git reference: v0.6.3 [harvester info] Scanning directory /tmp/codemeta-harvester.cache/annorepo for harvestable resources... [harvester info] found codemeta-harvest.json for annorepo (md5sum cd48d26b9b02c1b63b057be5369b56c3); values in here take precendence over (override) those in later detection stages [harvester info] found pom.xml (Java/Maven) for annorepo, converting to codemeta [harvester info] Looking for license.... [harvester info] Found license Apache-2.0 [harvester info] Parsing MAINTAINERS... [harvester info] Parsing AUTHORS... [harvester info] Parsing CONTRIBUTORS... [harvester info] Getting top contributor from git... [harvester info] Git top contributor will be assigned as author (and maintainer) if none are found in the metadata [harvester info] Extracting last and first commit date from git log.... [harvester info] Date created: 2022-03-24T17:29:49Z+0100, date modified: 2024-04-03T17:17:29Z+0200 [harvester info] Querying Github/GitLab API (https://github.com/knaw-huc/annorepo) [harvester info] Adding URL for found README: README.md [harvester info] Found releaseNotes [harvester info] Querying Zenodo API for DOI (access token provided)... [harvester info] Looking for TRL information in README.md... [harvester info] Found TRL https://w3id.org/research-technology-readiness-levels#Stage3Experimental [harvester info] Looking for repostatus information in README.md... [harvester info] Found repostatus https://www.repostatus.org/#active [harvester info] Looking for continuous integration information in README.md... [harvester info] Looking for documentation links in README.md... [harvester info] Falling back to git tag (v0.6.3) if no version number is specified... [harvester info] Inferring repostatus information from git activity (used only as a fallback if not explicitly provided)... [harvester info] Inferred repostatus https://www.repostatus.org/#active [harvester info] Looking for repostatus information in README.md in master branch... [harvester info] Found repostatus (master branch) https://www.repostatus.org/#active [harvester info] Parsing MAINTAINERS from master branch... [harvester info] Setting group AnnoRepo [harvester info] Reconciliating: codemetapy --baseuri https://tools.clariah.nl --baseuri https://tools.clariah.nl --includecontext --addcontext https://w3id.org/nwo-research-fields --addcontext https://w3id.org/research-technology-readiness-levels --addcontextgraph https://vocabs.dariah.eu/rest/v1/tadirah/data?format=text/turtle --trl --identifier "annorepo" --codeRepository "https://github.com/knaw-huc/annorepo" --validate /etc/software.ttl --released --enrich --textv "Please consult the CLARIAH Software Metadata Requirements at https://github.com/CLARIAH/clariah-plus/blob/main/requirements/software-metadata-requirements.md for an in-depth explanation of any found problems" -O /tmp/out/annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-version.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-repostatus.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/90-authors.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/43-releasenotes.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/41-readme.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/40-gitapi.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/39-gitdate.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/32-contributors.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/31-authors.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/30-maintainers.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/29-license.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/21-java.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/11-trl.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/11-repostatus.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/10-harvest.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/05-repostatus.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/05-maintainers.annorepo.codemeta.json /tmp/codemeta-harvester.cache//tmp/04-applicationSuite.annorepo.codemeta.json -- begin log -- Passed 18 files/sources but specified 0 input types! Automatically guessing types... Detected input types: [('/tmp/codemeta-harvester.cache//tmp/99-version.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/99-repostatus.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/90-authors.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/43-releasenotes.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/41-readme.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/40-gitapi.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/39-gitdate.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/32-contributors.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/31-authors.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/30-maintainers.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/29-license.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/21-java.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/11-trl.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/11-repostatus.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/10-harvest.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/05-repostatus.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/05-maintainers.annorepo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/04-applicationSuite.annorepo.codemeta.json', 'json')] Adding to contextgraph: /tmp/turtle Initial URI automatically generated, may be overriden later: https://tools.clariah.nl/annorepo Processing source #1 of 18 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-version.annorepo.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/annorepo [CODEMETA COMPOSITION (https://tools.clariah.nl/annorepo)] processed 1 new triples, total is now 2 Processing source #2 of 18 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-repostatus.annorepo.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/annorepo [CODEMETA COMPOSITION (https://tools.clariah.nl/annorepo)] processed 1 new triples, total is now 3 Processing source #3 of 18 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/90-authors.annorepo.codemeta.json Found main resource with URI https://tools.clariah.nl/annorepo.topcontributor/snapshot Injected (possibly temporary) URI https://tools.clariah.nl/annorepo [CODEMETA COMPOSITION (https://tools.clariah.nl/annorepo)] processed 1 new triples, total is now 3 Processing source #4 of 18 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/43-releasenotes.annorepo.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/annorepo [CODEMETA COMPOSITION (https://tools.clariah.nl/annorepo)] processed 2 new triples, total is now 5 Processing source #5 of 18 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/41-readme.annorepo.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/annorepo [CODEMETA COMPOSITION (https://tools.clariah.nl/annorepo)] processed 1 new triples, total is now 6 Processing source #6 of 18 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/40-gitapi.annorepo.codemeta.json Found main resource with URI https://tools.clariah.nl/annorepo/snapshot Injected (possibly temporary) URI https://tools.clariah.nl/annorepo [CODEMETA COMPOSITION (https://tools.clariah.nl/annorepo)] processed 16 new triples, total is now 21 Processing source #7 of 18 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/39-gitdate.annorepo.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/annorepo [CODEMETA COMPOSITION (https://tools.clariah.nl/annorepo)] overriding old http://schema.org/dateCreated (2022-03-24T16:29:48Z -> 2022-03-24T17:29:49Z+0100) [CODEMETA COMPOSITION (https://tools.clariah.nl/annorepo)] overriding old http://schema.org/dateModified (2024-09-17T09:25:47Z -> 2024-04-03T17:17:29Z+0200) [CODEMETA COMPOSITION (https://tools.clariah.nl/annorepo)] processed 2 new triples, total is now 21 Processing source #8 of 18 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/32-contributors.annorepo.codemeta.json Found main resource with URI https://tools.clariah.nl/contributors/snapshot Injected (possibly temporary) URI https://tools.clariah.nl/annorepo [CODEMETA COMPOSITION (https://tools.clariah.nl/annorepo)] processed 14 new triples, total is now 34 Processing source #9 of 18 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/31-authors.annorepo.codemeta.json Found main resource with URI https://tools.clariah.nl/authors/snapshot Injected (possibly temporary) URI https://tools.clariah.nl/annorepo [CODEMETA COMPOSITION (https://tools.clariah.nl/annorepo)] processed 8 new triples, total is now 37 Processing source #10 of 18 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/30-maintainers.annorepo.codemeta.json Found main resource with URI https://tools.clariah.nl/maintainers/snapshot Injected (possibly temporary) URI https://tools.clariah.nl/annorepo [CODEMETA COMPOSITION (https://tools.clariah.nl/annorepo)] processed 6 new triples, total is now 38 Processing source #11 of 18 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/29-license.annorepo.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/annorepo [CODEMETA COMPOSITION (https://tools.clariah.nl/annorepo)] overriding old http://schema.org/license (http://spdx.org/licenses/Apache-2.0 -> Apache-2.0) [CODEMETA CORRECTION (https://tools.clariah.nl/annorepo)] automatically converting license to spdx URI [CODEMETA COMPOSITION (https://tools.clariah.nl/annorepo)] processed 1 new triples, total is now 38 Processing source #12 of 18 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/21-java.annorepo.codemeta.json Found main resource with URI https://tools.clariah.nl/io.github.knaw-huc.annorepo/0.6.3 Injected (possibly temporary) URI https://tools.clariah.nl/annorepo [CODEMETA COMPOSITION (io.github.knaw-huc.annorepo)] overriding old http://schema.org/author (https://tools.clariah.nl/stub/H-15b5afeb2da5339f -> https://tools.clariah.nl/stub/H-76a0f3896d3884a5) [CODEMETA COMPOSITION (io.github.knaw-huc.annorepo)] overriding old http://schema.org/codeRepository (https://github.com/knaw-huc/annorepo -> http://github.com/knaw-huc/annorepo/tree/main) [CODEMETA COMPOSITION (io.github.knaw-huc.annorepo)] overriding old http://schema.org/description (Annotation Repository -> Implementation of W3C Web Annotation Protocol (root project)) [CODEMETA COMPOSITION (io.github.knaw-huc.annorepo)] overriding old http://schema.org/name (annorepo -> AnnoRepo) [CODEMETA COMPOSITION (io.github.knaw-huc.annorepo)] overriding old http://schema.org/producer (https://tools.clariah.nl/org/knaw-humanities-cluster -> https://tools.clariah.nl/org/huc-di) [CODEMETA COMPOSITION (io.github.knaw-huc.annorepo)] overriding old http://schema.org/version (v0.6.3 -> 0.6.3) [CODEMETA COMPOSITION (io.github.knaw-huc.annorepo)] processed 26 new triples, total is now 55 Processing source #13 of 18 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/11-trl.annorepo.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/annorepo [CODEMETA COMPOSITION (io.github.knaw-huc.annorepo)] processed 1 new triples, total is now 56 Processing source #14 of 18 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/11-repostatus.annorepo.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/annorepo [CODEMETA COMPOSITION (io.github.knaw-huc.annorepo)] processed 1 new triples, total is now 56 Processing source #15 of 18 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/10-harvest.annorepo.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/annorepo [CODEMETA COMPOSITION (io.github.knaw-huc.annorepo)] overriding old http://schema.org/programmingLanguage (Java -> Kotlin) [CODEMETA COMPOSITION (io.github.knaw-huc.annorepo)] overriding old http://schema.org/producer (https://tools.clariah.nl/org/huc-di -> https://huc.knaw.nl) [CODEMETA COMPOSITION (io.github.knaw-huc.annorepo)] processed 27 new triples, total is now 80 Processing source #16 of 18 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/05-repostatus.annorepo.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/annorepo [CODEMETA COMPOSITION (io.github.knaw-huc.annorepo)] processed 1 new triples, total is now 80 Processing source #17 of 18 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/05-maintainers.annorepo.codemeta.json Found main resource with URI https://tools.clariah.nl/maintainers/snapshot Injected (possibly temporary) URI https://tools.clariah.nl/annorepo [CODEMETA COMPOSITION (io.github.knaw-huc.annorepo)] processed 6 new triples, total is now 80 Processing source #18 of 18 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/04-applicationSuite.annorepo.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/annorepo [CODEMETA COMPOSITION (io.github.knaw-huc.annorepo)] processed 1 new triples, total is now 81 Remapping URI to (possibly) new identifier and version component: https://tools.clariah.nl/annorepo -> https://tools.clariah.nl/annorepo/0.6.3 [CODEMETA VALIDATION (annorepo)] done VALIDATION https://tools.clariah.nl/annorepo/0.6.3 #1: Info: Reference publications *SHOULD* be expressed, if any (This is missing in the metadata) -- end log -- [harvester info] Output written to /tmp/out/annorepo.codemeta.json [harvester info] <-- Finished processing annorepo (https://github.com/knaw-huc/annorepo) [Wed Sep 18 03:01:33 UTC 2024]