(log file starts at Wed Sep 18 03:04:59 UTC 2024) [harvester info] --> Processing deepfrog (https://github.com/proycon/deepfrog/) [Wed Sep 18 03:04:59 UTC 2024] [harvester info] Git updating cached clone of https://github.com/proycon/deepfrog/... [harvester info] Found release v0.2.1 [harvester info] Using 'v0.2.1' [harvester info] Git reference: v0.2.1 [harvester info] Scanning directory /tmp/codemeta-harvester.cache/deepfrog for harvestable resources... [harvester info] found Cargo.toml (rust) for deepfrog, converting to codemeta [harvester info] Looking for license.... [harvester info] Found license GPL-3.0-only [harvester info] Getting contributors from git... [harvester info] No git contributors found [harvester info] Getting top contributor from git... [harvester info] Git top contributor will be assigned as author (and maintainer) if none are found in the metadata [harvester info] Extracting last and first commit date from git log.... [harvester info] Date created: 2020-02-08T12:37:19Z+0100, date modified: 2021-04-11T15:29:58Z+0200 [harvester info] Querying Github/GitLab API (https://github.com/proycon/deepfrog/) [harvester info] Adding URL for found README: README.md [harvester info] Found releaseNotes [harvester info] Querying Zenodo API for DOI (access token provided)... [harvester info] Looking for TRL information in README.md... [harvester info] Mapping repostatus https://www.repostatus.org/#wip to trl:Stage3Experimental [harvester info] Looking for repostatus information in README.md... [harvester info] Found repostatus https://www.repostatus.org/#wip [harvester info] Looking for continuous integration information in README.md... [harvester info] Looking for documentation links in README.md... [harvester info] Falling back to git tag (v0.2.1) if no version number is specified... [harvester info] Inferring repostatus information from git activity (used only as a fallback if not explicitly provided)... [harvester info] Inferred repostatus https://www.repostatus.org/#inactive [harvester info] Looking for repostatus information in README.md in master branch... [harvester info] Found repostatus (master branch) https://www.repostatus.org/#suspended [harvester info] Reconciliating: codemetapy --baseuri https://tools.clariah.nl --baseuri https://tools.clariah.nl --includecontext --addcontext https://w3id.org/nwo-research-fields --addcontext https://w3id.org/research-technology-readiness-levels --addcontextgraph https://vocabs.dariah.eu/rest/v1/tadirah/data?format=text/turtle --trl --identifier "deepfrog" --codeRepository "https://github.com/proycon/deepfrog/" --validate /etc/software.ttl --released --enrich --textv "Please consult the CLARIAH Software Metadata Requirements at https://github.com/CLARIAH/clariah-plus/blob/main/requirements/software-metadata-requirements.md for an in-depth explanation of any found problems" -O /tmp/out/deepfrog.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-version.deepfrog.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-repostatus.deepfrog.codemeta.json /tmp/codemeta-harvester.cache//tmp/90-authors.deepfrog.codemeta.json /tmp/codemeta-harvester.cache//tmp/43-releasenotes.deepfrog.codemeta.json /tmp/codemeta-harvester.cache//tmp/41-readme.deepfrog.codemeta.json /tmp/codemeta-harvester.cache//tmp/40-gitapi.deepfrog.codemeta.json /tmp/codemeta-harvester.cache//tmp/39-gitdate.deepfrog.codemeta.json /tmp/codemeta-harvester.cache//tmp/29-license.deepfrog.codemeta.json /tmp/codemeta-harvester.cache//tmp/23-rust.deepfrog.codemeta.json /tmp/codemeta-harvester.cache//tmp/11-trl.deepfrog.codemeta.json /tmp/codemeta-harvester.cache//tmp/11-repostatus.deepfrog.codemeta.json /tmp/codemeta-harvester.cache//tmp/05-repostatus.deepfrog.codemeta.json -- begin log -- Passed 12 files/sources but specified 0 input types! Automatically guessing types... Detected input types: [('/tmp/codemeta-harvester.cache//tmp/99-version.deepfrog.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/99-repostatus.deepfrog.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/90-authors.deepfrog.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/43-releasenotes.deepfrog.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/41-readme.deepfrog.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/40-gitapi.deepfrog.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/39-gitdate.deepfrog.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/29-license.deepfrog.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/23-rust.deepfrog.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/11-trl.deepfrog.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/11-repostatus.deepfrog.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/05-repostatus.deepfrog.codemeta.json', 'json')] Adding to contextgraph: /tmp/turtle Initial URI automatically generated, may be overriden later: https://tools.clariah.nl/deepfrog Processing source #1 of 12 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-version.deepfrog.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/deepfrog [CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] processed 1 new triples, total is now 2 Processing source #2 of 12 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-repostatus.deepfrog.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/deepfrog [CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] processed 1 new triples, total is now 3 Processing source #3 of 12 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/90-authors.deepfrog.codemeta.json Found main resource with URI https://tools.clariah.nl/deepfrog.topcontributor/snapshot Injected (possibly temporary) URI https://tools.clariah.nl/deepfrog [CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] processed 1 new triples, total is now 3 Processing source #4 of 12 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/43-releasenotes.deepfrog.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/deepfrog [CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] processed 2 new triples, total is now 5 Processing source #5 of 12 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/41-readme.deepfrog.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/deepfrog [CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] processed 1 new triples, total is now 6 Processing source #6 of 12 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/40-gitapi.deepfrog.codemeta.json Found main resource with URI https://tools.clariah.nl/deepfrog/snapshot Injected (possibly temporary) URI https://tools.clariah.nl/deepfrog [CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] processed 28 new triples, total is now 33 Processing source #7 of 12 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/39-gitdate.deepfrog.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/deepfrog [CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] overriding old http://schema.org/dateCreated (2020-02-12T12:28:13Z -> 2020-02-08T12:37:19Z+0100) [CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] overriding old http://schema.org/dateModified (2023-03-24T23:53:13Z -> 2021-04-11T15:29:58Z+0200) [CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] processed 2 new triples, total is now 33 Processing source #8 of 12 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/29-license.deepfrog.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/deepfrog [CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] overriding old http://schema.org/license (http://spdx.org/licenses/GPL-3.0-only -> GPL-3.0-only) [CODEMETA CORRECTION (https://tools.clariah.nl/deepfrog)] automatically converting license to spdx URI [CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] processed 1 new triples, total is now 33 Processing source #9 of 12 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/23-rust.deepfrog.codemeta.json Found main resource with URI https://tools.clariah.nl/cargo.toml/0.2.1 Injected (possibly temporary) URI https://tools.clariah.nl/deepfrog [CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] overriding old http://schema.org/author (https://tools.clariah.nl/stub/H297f5329ffff7c59 -> https://tools.clariah.nl/stub/H-3baf9209a9358da4) [CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] overriding old http://schema.org/description (An NLP-suite powered by deep learning -> A deep learning NLP suite (PoS,lemmatiser,NER) with FoLiA XML support) [CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] overriding old http://schema.org/keywords (frog -> annotation) [CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] overriding old http://schema.org/keywords (transformers -> annotation) [CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] overriding old http://schema.org/keywords (dutch -> annotation) [CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] overriding old http://schema.org/keywords (deep-neural-networks -> annotation) [CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] overriding old http://schema.org/keywords (folia -> annotation) [CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] overriding old http://schema.org/keywords (deep-learning -> annotation) [CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] overriding old http://schema.org/license (http://spdx.org/licenses/GPL-3.0-only -> http://spdx.org/licenses/GPL-3.0-or-later) [CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] overriding old http://schema.org/version (v0.2.1 -> 0.2.1) [CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] processed 63 new triples, total is now 78 Processing source #10 of 12 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/11-trl.deepfrog.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/deepfrog [CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] processed 1 new triples, total is now 79 Processing source #11 of 12 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/11-repostatus.deepfrog.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/deepfrog [CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] overriding old https://codemeta.github.io/terms/developmentStatus (https://www.repostatus.org/#inactive -> https://www.repostatus.org/#wip) [CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] processed 1 new triples, total is now 79 Processing source #12 of 12 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/05-repostatus.deepfrog.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/deepfrog [CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] overriding old https://codemeta.github.io/terms/developmentStatus (https://www.repostatus.org/#wip -> https://www.repostatus.org/#suspended) [CODEMETA COMPOSITION (https://tools.clariah.nl/deepfrog)] processed 1 new triples, total is now 79 Remapping URI to (possibly) new identifier and version component: https://tools.clariah.nl/deepfrog -> https://tools.clariah.nl/deepfrog/0.2.1 [CODEMETA VALIDATION (deepfrog)] done [CODEMETA ENRICHMENT (deepfrog)] adding author https://tools.clariah.nl/person/maarten-van-gompel as contributor [CODEMETA ENRICHMENT (deepfrog)] adding affiliation(s) of first author as producer VALIDATION https://tools.clariah.nl/deepfrog/0.2.1 #1: Info: Software source code *SHOULD* link to a continuous integration service that builds the software and runs the software's tests (This is missing in the metadata) VALIDATION https://tools.clariah.nl/deepfrog/0.2.1 #2: Info: An interface type *SHOULD* be expressed: Software source code should define one or more target products that are the resulting software applications offering specific interfaces (This is missing in the metadata) VALIDATION https://tools.clariah.nl/deepfrog/0.2.1 #3: Warning: Documentation *SHOULD* be expressed (The metadata does express this currently, but something is wrong in the way it is expressed. Is the type/class valid?) VALIDATION https://tools.clariah.nl/deepfrog/0.2.1 #4: Info: Reference publications *SHOULD* be expressed, if any (This is missing in the metadata) VALIDATION https://tools.clariah.nl/deepfrog/0.2.1 #5: Info: The funder *SHOULD* be acknowledged (This is missing in the metadata) VALIDATION https://tools.clariah.nl/deepfrog/0.2.1 #6: Info: A research domain *SHOULD* be expressed as a category using the NWO Research Fields vocabulary, if applicable (This is missing in the metadata) VALIDATION https://tools.clariah.nl/deepfrog/0.2.1 #7: Info: A research activity *SHOULD* be expressed as a category using the TaDiRaH vocabulary (This is missing in the metadata) -- end log -- [harvester info] Output written to /tmp/out/deepfrog.codemeta.json [harvester info] <-- Finished processing deepfrog (https://github.com/proycon/deepfrog/) [Wed Sep 18 03:05:11 UTC 2024]