(log file starts at Wed Sep 18 03:05:56 UTC 2024) [harvester info] --> Processing flat (https://github.com/proycon/flat) [Wed Sep 18 03:05:56 UTC 2024] [harvester info] Git updating cached clone of https://github.com/proycon/flat... [harvester info] Found release v0.11.5 [harvester info] Using 'v0.11.5' [harvester info] Git reference: v0.11.5 [harvester info] Scanning directory /tmp/codemeta-harvester.cache/flat for harvestable resources... [harvester info] found python setup for flat, converting to codemeta [harvester info] Looking for license.... [harvester info] Found license GPL-3.0-only [harvester info] Getting contributors from git... [harvester info] No git contributors found [harvester info] Getting top contributor from git... [harvester info] Git top contributor will be assigned as author (and maintainer) if none are found in the metadata [harvester info] Extracting last and first commit date from git log.... [harvester info] Date created: 2014-01-02T14:39:13Z+0100, date modified: 2024-07-05T13:27:34Z+0200 [harvester info] Querying Github/GitLab API (https://github.com/proycon/flat) [harvester info] Adding URL for found README: README.rst [harvester info] Found releaseNotes [harvester info] Querying Zenodo API for DOI (access token provided)... [harvester info] Found DOI https://doi.org/10.5281/zenodo.12666438 [harvester info] Converting README.rst to README.md [harvester info] Looking for TRL information in README.md... [harvester info] Looking for repostatus information in README.md... [harvester info] Found repostatus https://www.repostatus.org/#active [harvester info] Looking for continuous integration information in README.md... [harvester info] Looking for documentation links in README.md... [harvester info] Scraping title from http://flat.readthedocs.io/en/latest/?badge=latest [harvester info] Found documentation at http://flat.readthedocs.io/en/latest/?badge=latest : "name": "FLAT - FoLiA Linguistic Annotation Tool - Documentation — FLAT v0.5.2 documentation", [harvester info] Scraping title from http://flat.readthedocs.io/en/latest/administration_guide.html [harvester info] Found documentation at http://flat.readthedocs.io/en/latest/administration_guide.html : "name": "FLAT Administration Guide — FLAT v0.5.2 documentation", [harvester info] Scraping title from http://flat.readthedocs.io/en/latest/installation_guide.html [harvester info] Found documentation at http://flat.readthedocs.io/en/latest/installation_guide.html : "name": "FLAT Installation Guide — FLAT v0.5.2 documentation", [harvester info] Scraping title from http://flat.readthedocs.io/en/latest/user_guide.html [harvester info] Found documentation at http://flat.readthedocs.io/en/latest/user_guide.html : "name": "FLAT User Guide — FLAT v0.5.2 documentation", [harvester info] Falling back to git tag (v0.11.5) if no version number is specified... [harvester info] Inferring repostatus information from git activity (used only as a fallback if not explicitly provided)... [harvester info] Inferred repostatus https://www.repostatus.org/#active [harvester info] Looking for repostatus information in README.rst in master branch... [harvester info] Found repostatus (master branch) https://www.repostatus.org/#active [harvester info] Setting group FLAT [harvester info] Reconciliating: codemetapy --baseuri https://tools.clariah.nl --baseuri https://tools.clariah.nl --includecontext --addcontext https://w3id.org/nwo-research-fields --addcontext https://w3id.org/research-technology-readiness-levels --addcontextgraph https://vocabs.dariah.eu/rest/v1/tadirah/data?format=text/turtle --trl --identifier "flat" --codeRepository "https://github.com/proycon/flat" --validate /etc/software.ttl --released --enrich --textv "Please consult the CLARIAH Software Metadata Requirements at https://github.com/CLARIAH/clariah-plus/blob/main/requirements/software-metadata-requirements.md for an in-depth explanation of any found problems" -O /tmp/out/flat.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-version.flat.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-repostatus.flat.codemeta.json /tmp/codemeta-harvester.cache//tmp/90-authors.flat.codemeta.json /tmp/codemeta-harvester.cache//tmp/50-documentation.flat.codemeta.json /tmp/codemeta-harvester.cache//tmp/43-releasenotes.flat.codemeta.json /tmp/codemeta-harvester.cache//tmp/41-readme.flat.codemeta.json /tmp/codemeta-harvester.cache//tmp/40-gitapi.flat.codemeta.json /tmp/codemeta-harvester.cache//tmp/39-gitdate.flat.codemeta.json /tmp/codemeta-harvester.cache//tmp/29-license.flat.codemeta.json /tmp/codemeta-harvester.cache//tmp/20-python.flat.codemeta.json /tmp/codemeta-harvester.cache//tmp/11-repostatus.flat.codemeta.json /tmp/codemeta-harvester.cache//tmp/05-repostatus.flat.codemeta.json /tmp/codemeta-harvester.cache//tmp/05-doi.flat.codemeta.json /tmp/codemeta-harvester.cache//tmp/04-applicationSuite.flat.codemeta.json -- begin log -- Passed 14 files/sources but specified 0 input types! Automatically guessing types... Detected input types: [('/tmp/codemeta-harvester.cache//tmp/99-version.flat.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/99-repostatus.flat.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/90-authors.flat.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/50-documentation.flat.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/43-releasenotes.flat.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/41-readme.flat.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/40-gitapi.flat.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/39-gitdate.flat.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/29-license.flat.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/20-python.flat.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/11-repostatus.flat.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/05-repostatus.flat.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/05-doi.flat.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/04-applicationSuite.flat.codemeta.json', 'json')] Adding to contextgraph: /tmp/turtle Initial URI automatically generated, may be overriden later: https://tools.clariah.nl/flat Processing source #1 of 14 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-version.flat.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/flat [CODEMETA COMPOSITION (https://tools.clariah.nl/flat)] processed 1 new triples, total is now 2 Processing source #2 of 14 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-repostatus.flat.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/flat [CODEMETA COMPOSITION (https://tools.clariah.nl/flat)] processed 1 new triples, total is now 3 Processing source #3 of 14 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/90-authors.flat.codemeta.json Found main resource with URI https://tools.clariah.nl/flat.topcontributor/snapshot Injected (possibly temporary) URI https://tools.clariah.nl/flat [CODEMETA COMPOSITION (https://tools.clariah.nl/flat)] processed 1 new triples, total is now 3 Processing source #4 of 14 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/50-documentation.flat.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/flat [CODEMETA COMPOSITION (https://tools.clariah.nl/flat)] processed 16 new triples, total is now 19 Processing source #5 of 14 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/43-releasenotes.flat.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/flat [CODEMETA COMPOSITION (https://tools.clariah.nl/flat)] processed 2 new triples, total is now 21 Processing source #6 of 14 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/41-readme.flat.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/flat [CODEMETA COMPOSITION (https://tools.clariah.nl/flat)] processed 1 new triples, total is now 22 Processing source #7 of 14 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/40-gitapi.flat.codemeta.json Found main resource with URI https://tools.clariah.nl/flat/snapshot Injected (possibly temporary) URI https://tools.clariah.nl/flat [CODEMETA COMPOSITION (https://tools.clariah.nl/flat)] processed 32 new triples, total is now 53 Processing source #8 of 14 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/39-gitdate.flat.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/flat [CODEMETA COMPOSITION (https://tools.clariah.nl/flat)] overriding old http://schema.org/dateCreated (2014-01-02T13:38:48Z -> 2014-01-02T14:39:13Z+0100) [CODEMETA COMPOSITION (https://tools.clariah.nl/flat)] overriding old http://schema.org/dateModified (2024-07-05T11:30:00Z -> 2024-07-05T13:27:34Z+0200) [CODEMETA COMPOSITION (https://tools.clariah.nl/flat)] processed 2 new triples, total is now 53 Processing source #9 of 14 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/29-license.flat.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/flat [CODEMETA COMPOSITION (https://tools.clariah.nl/flat)] overriding old http://schema.org/license (http://spdx.org/licenses/GPL-3.0-only -> GPL-3.0-only) [CODEMETA CORRECTION (https://tools.clariah.nl/flat)] automatically converting license to spdx URI [CODEMETA COMPOSITION (https://tools.clariah.nl/flat)] processed 1 new triples, total is now 53 Processing source #10 of 14 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/20-python.flat.codemeta.json Found main resource with URI https://tools.clariah.nl/folia-linguistic-annotation-tool/0.11.5 Injected (possibly temporary) URI https://tools.clariah.nl/flat [CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] overriding old http://schema.org/author (https://tools.clariah.nl/stub/H-2db358ffac1276e3 -> https://tools.clariah.nl/stub/H1b6f15887e70758c) [CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] overriding old http://schema.org/description (FoLiA Linguistic Annotation Tool -- Flat is a web-based linguistic annotation environment based around the FoLiA format (http://proycon.github.io/folia), a rich XML-based format for linguistic annotation. Flat allows users to view annotated FoLiA documents and enrich these documents with new annotations, a wide variety of linguistic annotation types is supported through the FoLiA paradigm. -> FLAT is a web-based linguistic annotation environment based around the FoLiA format (https://proycon.github.io/folia), a rich XML-based format for linguistic annotation. Flat allows users to view annotated FoLiA documents and enrich these documents with new annotations, a wide variety of linguistic annotation types is supported through the FoLiA paradigm.) [CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] overriding old http://schema.org/keywords (clarin -> annotation) [CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] overriding old http://schema.org/keywords (python -> annotation) [CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] overriding old http://schema.org/keywords (javascript -> annotation) [CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] overriding old http://schema.org/keywords (annotation-tool -> annotation) [CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] overriding old http://schema.org/keywords (computational-linguistics -> annotation) [CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] overriding old http://schema.org/keywords (web-application -> annotation) [CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] overriding old http://schema.org/keywords (clariah -> annotation) [CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] overriding old http://schema.org/keywords (linguistic-annotation-framework -> annotation) [CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] overriding old http://schema.org/name (flat -> FoLiA-Linguistic-Annotation-Tool) [CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] overriding old http://schema.org/version (v0.11.5 -> 0.11.5) [CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] processed 83 new triples, total is now 112 Processing source #11 of 14 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/11-repostatus.flat.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/flat [CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] processed 1 new triples, total is now 112 Processing source #12 of 14 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/05-repostatus.flat.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/flat [CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] processed 1 new triples, total is now 112 Processing source #13 of 14 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/05-doi.flat.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/flat [CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] overriding old http://schema.org/identifier (folia-linguistic-annotation-tool -> ) [CODEMETA COMPOSITION (folia-linguistic-annotation-tool)] processed 5 new triples, total is now 116 Processing source #14 of 14 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/04-applicationSuite.flat.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/flat [CODEMETA COMPOSITION (https://tools.clariah.nl/flat)] processed 1 new triples, total is now 117 Remapping URI to (possibly) new identifier and version component: https://tools.clariah.nl/flat -> https://tools.clariah.nl/flat/0.11.5 [CODEMETA VALIDATION (flat)] done [CODEMETA ENRICHMENT (flat)] Guessing interface type https://w3id.org/software-types#WebApplication based on clues [CODEMETA ENRICHMENT (flat)] automatically adding programmingLanguage Python derived from runtimePlatform Python [CODEMETA ENRICHMENT (flat)] automatically adding programmingLanguage Python derived from runtimePlatform Python [CODEMETA ENRICHMENT (flat)] automatically adding programmingLanguage Python derived from runtimePlatform Python [CODEMETA ENRICHMENT (flat)] automatically adding programmingLanguage Python derived from runtimePlatform Python [CODEMETA ENRICHMENT (flat)] automatically adding programmingLanguage Python derived from runtimePlatform Python [CODEMETA ENRICHMENT (flat)] automatically adding programmingLanguage Python derived from runtimePlatform Python [CODEMETA ENRICHMENT (flat)] adding author https://tools.clariah.nl/person/maarten-van-gompel as contributor [CODEMETA ENRICHMENT (flat)] adding affiliation(s) of first author as producer VALIDATION https://tools.clariah.nl/flat/0.11.5 #1: Info: Software source code *SHOULD* link to a continuous integration service that builds the software and runs the software's tests (This is missing in the metadata) VALIDATION https://tools.clariah.nl/flat/0.11.5 #2: Info: An interface type *SHOULD* be expressed: Software source code should define one or more target products that are the resulting software applications offering specific interfaces (The metadata does express this currently, but something is wrong in the way it is expressed. Is the type/class valid?) VALIDATION https://tools.clariah.nl/flat/0.11.5 #3: Info: Reference publications *SHOULD* be expressed, if any (This is missing in the metadata) VALIDATION https://tools.clariah.nl/flat/0.11.5 #4: Info: The funder *SHOULD* be acknowledged (This is missing in the metadata) VALIDATION https://tools.clariah.nl/flat/0.11.5 #5: Info: A research domain *SHOULD* be expressed as a category using the NWO Research Fields vocabulary, if applicable (This is missing in the metadata) VALIDATION https://tools.clariah.nl/flat/0.11.5 #6: Info: A research activity *SHOULD* be expressed as a category using the TaDiRaH vocabulary (This is missing in the metadata) -- end log -- [harvester info] Output written to /tmp/out/flat.codemeta.json [harvester info] Harvesting remote service URL https://webservices.cls.ru.nl/flat/ for flat: codemetapy --baseuri https://tools.clariah.nl --baseuri https://tools.clariah.nl --includecontext --addcontext https://w3id.org/nwo-research-fields --addcontext https://w3id.org/research-technology-readiness-levels --addcontextgraph https://vocabs.dariah.eu/rest/v1/tadirah/data?format=text/turtle --trl -O "/tmp/codemeta-harvester.cache//tmp/flat.codemeta.json" "/tmp/out/flat.codemeta.json" "https://webservices.cls.ru.nl/flat/" [harvester info] <-- Finished processing flat (https://github.com/proycon/flat) [Wed Sep 18 03:06:12 UTC 2024]