(log file starts at Wed Sep 18 03:12:04 UTC 2024)
[harvester info] --> Processing orphan service nederlab-portal [Wed Sep 18 03:12:04 UTC 2024]
[harvester info] Creating dummy codemeta.json for orphan service: codemetapy --identifier "nederlab-portal" --validate /etc/software.ttl /dev/null > /tmp/out/nederlab-portal.codemeta.json
[harvester info] Harvesting remote service URL https://www.nederlab.nl for nederlab-portal: codemetapy  --baseuri https://tools.clariah.nl --baseuri https://tools.clariah.nl --includecontext --addcontext https://w3id.org/nwo-research-fields --addcontext https://w3id.org/research-technology-readiness-levels --addcontextgraph https://vocabs.dariah.eu/rest/v1/tadirah/data?format=text/turtle --trl -O "/tmp/codemeta-harvester.cache//tmp/nederlab-portal.codemeta.json" "/tmp/out/nederlab-portal.codemeta.json" "https://www.nederlab.nl"
-- begin log --
Passed 2 files/sources but specified 0 input types! Automatically guessing types...
Traceback (most recent call last):
  File "/usr/lib/python3.12/site-packages/urllib3/connection.py", line 174, in _new_conn
    conn = connection.create_connection(
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.12/site-packages/urllib3/util/connection.py", line 95, in create_connection
    raise err
  File "/usr/lib/python3.12/site-packages/urllib3/util/connection.py", line 85, in create_connection
    sock.connect(sa)
TimeoutError: [Errno 110] Operation timed out

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/lib/python3.12/site-packages/urllib3/connectionpool.py", line 715, in urlopen
    httplib_response = self._make_request(
                       ^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.12/site-packages/urllib3/connectionpool.py", line 404, in _make_request
    self._validate_conn(conn)
  File "/usr/lib/python3.12/site-packages/urllib3/connectionpool.py", line 1058, in _validate_conn
    conn.connect()
  File "/usr/lib/python3.12/site-packages/urllib3/connection.py", line 363, in connect
    self.sock = conn = self._new_conn()
                       ^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.12/site-packages/urllib3/connection.py", line 179, in _new_conn
    raise ConnectTimeoutError(
urllib3.exceptions.ConnectTimeoutError: (<urllib3.connection.HTTPSConnection object at 0x7f1d10c7b710>, 'Connection to www.nederlab.nl timed out. (connect timeout=None)')

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/lib/python3.12/site-packages/requests/adapters.py", line 486, in send
    resp = conn.urlopen(
           ^^^^^^^^^^^^^
  File "/usr/lib/python3.12/site-packages/urllib3/connectionpool.py", line 799, in urlopen
    retries = retries.increment(
              ^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.12/site-packages/urllib3/util/retry.py", line 592, in increment
    raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='www.nederlab.nl', port=443): Max retries exceeded with url: /-/manifest.json (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f1d10c7b710>, 'Connection to www.nederlab.nl timed out. (connect timeout=None)'))

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/bin/codemetapy", line 8, in <module>
    sys.exit(main())
             ^^^^^^
  File "/usr/lib/python3.12/site-packages/codemeta/codemeta.py", line 335, in main
    g, res, args, contextgraph = build(**args.__dict__)
                                 ^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.12/site-packages/codemeta/codemeta.py", line 558, in build
    repo_kind = codemeta.parsers.gitapi.get_repo_kind(inputsource)
                ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.12/site-packages/codemeta/parsers/gitapi.py", line 54, in get_repo_kind
    response = requests.get(test_url)
               ^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.12/site-packages/requests/api.py", line 73, in get
    return request("get", url, params=params, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.12/site-packages/requests/api.py", line 59, in request
    return session.request(method=method, url=url, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.12/site-packages/requests/sessions.py", line 589, in request
    resp = self.send(prep, **send_kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.12/site-packages/requests/sessions.py", line 703, in send
    r = adapter.send(request, **kwargs)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.12/site-packages/requests/adapters.py", line 507, in send
    raise ConnectTimeout(e, request=request)
requests.exceptions.ConnectTimeout: HTTPSConnectionPool(host='www.nederlab.nl', port=443): Max retries exceeded with url: /-/manifest.json (Caused by ConnectTimeoutError(<urllib3.connection.HTTPSConnection object at 0x7f1d10c7b710>, 'Connection to www.nederlab.nl timed out. (connect timeout=None)'))
-- end log --
[harvester error] Failed to obtain or process metadata from remote service URL https://www.nederlab.nl for nederlab-portal
[harvester info] <-- Finished processing nederlab-portal () [Wed Sep 18 03:14:16 UTC 2024]