(log file starts at Wed Sep 18 03:14:31 UTC 2024) [harvester info] --> Processing pagexml-tools (https://github.com/knaw-huc/pagexml) [Wed Sep 18 03:14:31 UTC 2024] [harvester info] Git updating cached clone of https://github.com/knaw-huc/pagexml... [harvester info] Found release v0.5.0 [harvester info] Using 'v0.5.0' [harvester info] Git reference: v0.5.0 [harvester info] Scanning directory /tmp/codemeta-harvester.cache/pagexml-tools for harvestable resources... [harvester info] found CITATION.cff for pagexml-tools, converting to codemeta [harvester info] found python setup for pagexml-tools, converting to codemeta [harvester info] Looking for license.... [harvester info] Found license MIT [harvester info] Getting contributors from git... [harvester info] No git contributors found [harvester info] Getting top contributor from git... [harvester info] Git top contributor will be assigned as author (and maintainer) if none are found in the metadata [harvester info] Extracting last and first commit date from git log.... [harvester info] Date created: 2021-05-07T23:31:51Z+0200, date modified: 2024-03-18T14:49:12Z+0100 [harvester info] Querying Github/GitLab API (https://github.com/knaw-huc/pagexml) [harvester info] Adding URL for found README: README.md [harvester info] Found releaseNotes [harvester info] Querying Zenodo API for DOI (access token provided)... [harvester info] Looking for TRL information in README.md... [harvester info] Looking for repostatus information in README.md... [harvester info] Found repostatus https://www.repostatus.org/#active [harvester info] Looking for continuous integration information in README.md... [harvester info] Looking for documentation links in README.md... [harvester info] Scraping title from https://pagexml.readthedocs.io/en/latest/ [harvester info] Found documentation at https://pagexml.readthedocs.io/en/latest/ : "name": "pagexml-tools — pagexml-tools 0.3.2 documentation", [harvester info] Scraping title from https://pagexml.readthedocs.io/en/latest/?badge=latest [harvester info] Found documentation at https://pagexml.readthedocs.io/en/latest/?badge=latest : "name": "pagexml-tools — pagexml-tools 0.3.2 documentation", [harvester info] Falling back to git tag (v0.5.0) if no version number is specified... [harvester info] Inferring repostatus information from git activity (used only as a fallback if not explicitly provided)... [harvester info] Inferred repostatus https://www.repostatus.org/#active [harvester info] Looking for repostatus information in README.md in master branch... [harvester info] Found repostatus (master branch) https://www.repostatus.org/#active [harvester info] Reconciliating: codemetapy --baseuri https://tools.clariah.nl --baseuri https://tools.clariah.nl --includecontext --addcontext https://w3id.org/nwo-research-fields --addcontext https://w3id.org/research-technology-readiness-levels --addcontextgraph https://vocabs.dariah.eu/rest/v1/tadirah/data?format=text/turtle --trl --identifier "pagexml-tools" --codeRepository "https://github.com/knaw-huc/pagexml" --validate /etc/software.ttl --released --enrich --textv "Please consult the CLARIAH Software Metadata Requirements at https://github.com/CLARIAH/clariah-plus/blob/main/requirements/software-metadata-requirements.md for an in-depth explanation of any found problems" -O /tmp/out/pagexml-tools.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-version.pagexml-tools.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-repostatus.pagexml-tools.codemeta.json /tmp/codemeta-harvester.cache//tmp/90-authors.pagexml-tools.codemeta.json /tmp/codemeta-harvester.cache//tmp/50-documentation.pagexml-tools.codemeta.json /tmp/codemeta-harvester.cache//tmp/43-releasenotes.pagexml-tools.codemeta.json /tmp/codemeta-harvester.cache//tmp/41-readme.pagexml-tools.codemeta.json /tmp/codemeta-harvester.cache//tmp/40-gitapi.pagexml-tools.codemeta.json /tmp/codemeta-harvester.cache//tmp/39-gitdate.pagexml-tools.codemeta.json /tmp/codemeta-harvester.cache//tmp/29-license.pagexml-tools.codemeta.json /tmp/codemeta-harvester.cache//tmp/20-python.pagexml-tools.codemeta.json /tmp/codemeta-harvester.cache//tmp/12-citationcff.pagexml-tools.codemeta.json /tmp/codemeta-harvester.cache//tmp/11-repostatus.pagexml-tools.codemeta.json /tmp/codemeta-harvester.cache//tmp/05-repostatus.pagexml-tools.codemeta.json -- begin log -- Passed 13 files/sources but specified 0 input types! Automatically guessing types... Detected input types: [('/tmp/codemeta-harvester.cache//tmp/99-version.pagexml-tools.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/99-repostatus.pagexml-tools.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/90-authors.pagexml-tools.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/50-documentation.pagexml-tools.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/43-releasenotes.pagexml-tools.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/41-readme.pagexml-tools.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/40-gitapi.pagexml-tools.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/39-gitdate.pagexml-tools.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/29-license.pagexml-tools.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/20-python.pagexml-tools.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/12-citationcff.pagexml-tools.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/11-repostatus.pagexml-tools.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/05-repostatus.pagexml-tools.codemeta.json', 'json')] Adding to contextgraph: /tmp/turtle Initial URI automatically generated, may be overriden later: https://tools.clariah.nl/pagexml-tools Processing source #1 of 13 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-version.pagexml-tools.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/pagexml-tools [CODEMETA COMPOSITION (https://tools.clariah.nl/pagexml-tools)] processed 1 new triples, total is now 2 Processing source #2 of 13 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-repostatus.pagexml-tools.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/pagexml-tools [CODEMETA COMPOSITION (https://tools.clariah.nl/pagexml-tools)] processed 1 new triples, total is now 3 Processing source #3 of 13 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/90-authors.pagexml-tools.codemeta.json Found main resource with URI https://tools.clariah.nl/pagexml-tools.topcontributor/snapshot Injected (possibly temporary) URI https://tools.clariah.nl/pagexml-tools [CODEMETA COMPOSITION (https://tools.clariah.nl/pagexml-tools)] processed 1 new triples, total is now 3 Processing source #4 of 13 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/50-documentation.pagexml-tools.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/pagexml-tools [CODEMETA COMPOSITION (https://tools.clariah.nl/pagexml-tools)] processed 8 new triples, total is now 11 Processing source #5 of 13 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/43-releasenotes.pagexml-tools.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/pagexml-tools [CODEMETA COMPOSITION (https://tools.clariah.nl/pagexml-tools)] processed 2 new triples, total is now 13 Processing source #6 of 13 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/41-readme.pagexml-tools.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/pagexml-tools [CODEMETA COMPOSITION (https://tools.clariah.nl/pagexml-tools)] processed 1 new triples, total is now 14 Processing source #7 of 13 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/40-gitapi.pagexml-tools.codemeta.json Found main resource with URI https://tools.clariah.nl/pagexml/snapshot Injected (possibly temporary) URI https://tools.clariah.nl/pagexml-tools [CODEMETA COMPOSITION (https://tools.clariah.nl/pagexml-tools)] processed 12 new triples, total is now 25 Processing source #8 of 13 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/39-gitdate.pagexml-tools.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/pagexml-tools [CODEMETA COMPOSITION (https://tools.clariah.nl/pagexml-tools)] overriding old http://schema.org/dateCreated (2021-05-07T21:11:32Z -> 2021-05-07T23:31:51Z+0200) [CODEMETA COMPOSITION (https://tools.clariah.nl/pagexml-tools)] overriding old http://schema.org/dateModified (2024-05-23T14:07:14Z -> 2024-03-18T14:49:12Z+0100) [CODEMETA COMPOSITION (https://tools.clariah.nl/pagexml-tools)] processed 2 new triples, total is now 25 Processing source #9 of 13 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/29-license.pagexml-tools.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/pagexml-tools [CODEMETA COMPOSITION (https://tools.clariah.nl/pagexml-tools)] overriding old http://schema.org/license (http://spdx.org/licenses/MIT -> MIT) [CODEMETA CORRECTION (https://tools.clariah.nl/pagexml-tools)] automatically converting license to spdx URI [CODEMETA COMPOSITION (https://tools.clariah.nl/pagexml-tools)] processed 1 new triples, total is now 25 Processing source #10 of 13 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/20-python.pagexml-tools.codemeta.json Found main resource with URI https://tools.clariah.nl/pagexml-tools/0.5.0 Injected (possibly temporary) URI https://tools.clariah.nl/pagexml-tools [CODEMETA COMPOSITION (pagexml-tools)] overriding old https://codemeta.github.io/terms/developmentStatus (https://www.repostatus.org/#active -> https://www.repostatus.org/#wip) [CODEMETA COMPOSITION (pagexml-tools)] overriding old http://schema.org/name (pagexml -> pagexml-tools) [CODEMETA COMPOSITION (pagexml-tools)] overriding old http://schema.org/version (v0.5.0 -> 0.5.0) [CODEMETA COMPOSITION (pagexml-tools)] processed 129 new triples, total is now 146 Processing source #11 of 13 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/12-citationcff.pagexml-tools.codemeta.json Injected (possibly temporary) URI https://tools.clariah.nl/pagexml-tools [CODEMETA COMPOSITION (pagexml-tools)] overriding old http://schema.org/author (https://tools.clariah.nl/stub/H5c7e4636c45ed3e3 -> https://tools.clariah.nl/stub/H576cc03ba7e9018f) [CODEMETA COMPOSITION (pagexml-tools)] processed 15 new triples, total is now 157 Processing source #12 of 13 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/11-repostatus.pagexml-tools.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/pagexml-tools [CODEMETA COMPOSITION (pagexml-tools)] overriding old https://codemeta.github.io/terms/developmentStatus (https://www.repostatus.org/#wip -> https://www.repostatus.org/#active) [CODEMETA COMPOSITION (pagexml-tools)] processed 1 new triples, total is now 157 Processing source #13 of 13 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/05-repostatus.pagexml-tools.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/pagexml-tools [CODEMETA COMPOSITION (pagexml-tools)] processed 1 new triples, total is now 157 Remapping URI to (possibly) new identifier and version component: https://tools.clariah.nl/pagexml-tools -> https://tools.clariah.nl/pagexml-tools/0.5.0 [CODEMETA VALIDATION (pagexml-tools)] done [CODEMETA ENRICHMENT (pagexml-tools)] automatically adding programmingLanguage Python derived from runtimePlatform Python [CODEMETA ENRICHMENT (pagexml-tools)] adding author https://orcid.org/0000-0002-0301-2029 as contributor [CODEMETA ENRICHMENT (pagexml-tools)] adding author https://orcid.org/0000-0002-3755-5929 as contributor [CODEMETA ENRICHMENT (pagexml-tools)] considering first author as maintainer VALIDATION https://tools.clariah.nl/pagexml-tools/0.5.0 #1: Info: Software source code *SHOULD* link to a continuous integration service that builds the software and runs the software's tests (This is missing in the metadata) VALIDATION https://tools.clariah.nl/pagexml-tools/0.5.0 #2: Info: Reference publications *SHOULD* be expressed, if any (This is missing in the metadata) VALIDATION https://tools.clariah.nl/pagexml-tools/0.5.0 #3: Info: The funder *SHOULD* be acknowledged (This is missing in the metadata) VALIDATION https://tools.clariah.nl/pagexml-tools/0.5.0 #4: Info: A research domain *SHOULD* be expressed as a category using the NWO Research Fields vocabulary, if applicable (This is missing in the metadata) VALIDATION https://tools.clariah.nl/pagexml-tools/0.5.0 #5: Info: A research activity *SHOULD* be expressed as a category using the TaDiRaH vocabulary (This is missing in the metadata) -- end log -- [harvester info] Output written to /tmp/out/pagexml-tools.codemeta.json [harvester info] <-- Finished processing pagexml-tools (https://github.com/knaw-huc/pagexml) [Wed Sep 18 03:14:43 UTC 2024]