(log file starts at Wed Sep 18 03:16:49 UTC 2024) [harvester info] --> Processing stam-python (https://github.com/annotation/stam-python) [Wed Sep 18 03:16:49 UTC 2024] [harvester info] Git updating cached clone of https://github.com/annotation/stam-python... [harvester info] Found release v0.9.0 [harvester info] Using 'v0.9.0' [harvester info] Git reference: v0.9.0 [harvester info] Scanning directory /tmp/codemeta-harvester.cache/stam-python for harvestable resources... [harvester info] found codemeta-harvest.json for stam-python (md5sum 47f7539dabba7c4fffebf125100d8e7a); values in here take precendence over (override) those in later detection stages [harvester info] found python setup for stam-python, converting to codemeta [harvester info] found Cargo.toml (rust) for stam-python, converting to codemeta [harvester info] Looking for license.... [harvester info] Found license GPL-3.0-only [harvester info] Getting contributors from git... [harvester info] No git contributors found [harvester info] Getting top contributor from git... [harvester info] Git top contributor will be assigned as author (and maintainer) if none are found in the metadata [harvester info] Extracting last and first commit date from git log.... [harvester info] Date created: 2023-01-31T14:47:01Z+0100, date modified: 2024-08-29T18:19:39Z+0200 [harvester info] Querying Github/GitLab API (https://github.com/annotation/stam-python) [harvester info] Adding URL for found README: README.md [harvester info] Found releaseNotes [harvester info] Querying Zenodo API for DOI (access token provided)... [harvester info] Found DOI https://doi.org/10.5281/zenodo.13507634 [harvester info] Looking for TRL information in README.md... [harvester info] Found TRL https://w3id.org/research-technology-readiness-levels#Level7ReleaseCandidate [harvester info] Looking for repostatus information in README.md... [harvester info] Found repostatus https://www.repostatus.org/#active [harvester info] Looking for continuous integration information in README.md... [harvester info] Looking for documentation links in README.md... [harvester info] Scraping title from https://stam-python.readthedocs.io [harvester info] Found documentation at https://stam-python.readthedocs.io : "name": "STAM Library for Python - API Documentation — stam-python version = '0.9.0' documentation", [harvester info] Falling back to git tag (v0.9.0) if no version number is specified... [harvester info] Inferring repostatus information from git activity (used only as a fallback if not explicitly provided)... [harvester info] Inferred repostatus https://www.repostatus.org/#active [harvester info] Looking for repostatus information in README.md in master branch... [harvester info] Found repostatus (master branch) https://www.repostatus.org/#active [harvester info] Setting group STAM [harvester info] Reconciliating: codemetapy --baseuri https://tools.clariah.nl --baseuri https://tools.clariah.nl --includecontext --addcontext https://w3id.org/nwo-research-fields --addcontext https://w3id.org/research-technology-readiness-levels --addcontextgraph https://vocabs.dariah.eu/rest/v1/tadirah/data?format=text/turtle --trl --identifier "stam-python" --codeRepository "https://github.com/annotation/stam-python" --validate /etc/software.ttl --released --enrich --textv "Please consult the CLARIAH Software Metadata Requirements at https://github.com/CLARIAH/clariah-plus/blob/main/requirements/software-metadata-requirements.md for an in-depth explanation of any found problems" -O /tmp/out/stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-version.stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-repostatus.stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/90-authors.stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/50-documentation.stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/43-releasenotes.stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/41-readme.stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/40-gitapi.stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/39-gitdate.stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/29-license.stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/23-rust.stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/20-python.stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/11-trl.stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/11-repostatus.stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/10-harvest.stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/05-repostatus.stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/05-doi.stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/04-applicationSuite.stam-python.codemeta.json -- begin log -- Passed 17 files/sources but specified 0 input types! Automatically guessing types... Detected input types: [('/tmp/codemeta-harvester.cache//tmp/99-version.stam-python.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/99-repostatus.stam-python.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/90-authors.stam-python.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/50-documentation.stam-python.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/43-releasenotes.stam-python.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/41-readme.stam-python.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/40-gitapi.stam-python.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/39-gitdate.stam-python.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/29-license.stam-python.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/23-rust.stam-python.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/20-python.stam-python.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/11-trl.stam-python.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/11-repostatus.stam-python.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/10-harvest.stam-python.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/05-repostatus.stam-python.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/05-doi.stam-python.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/04-applicationSuite.stam-python.codemeta.json', 'json')] Adding to contextgraph: /tmp/turtle Initial URI automatically generated, may be overriden later: https://tools.clariah.nl/stam-python Processing source #1 of 17 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-version.stam-python.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/stam-python [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] processed 1 new triples, total is now 2 Processing source #2 of 17 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-repostatus.stam-python.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/stam-python [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] processed 1 new triples, total is now 3 Processing source #3 of 17 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/90-authors.stam-python.codemeta.json Found main resource with URI https://tools.clariah.nl/stam-python.topcontributor/snapshot Injected (possibly temporary) URI https://tools.clariah.nl/stam-python [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] processed 1 new triples, total is now 3 Processing source #4 of 17 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/50-documentation.stam-python.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/stam-python [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] processed 4 new triples, total is now 7 Processing source #5 of 17 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/43-releasenotes.stam-python.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/stam-python [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] processed 2 new triples, total is now 9 Processing source #6 of 17 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/41-readme.stam-python.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/stam-python [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] processed 1 new triples, total is now 10 Processing source #7 of 17 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/40-gitapi.stam-python.codemeta.json Found main resource with URI https://tools.clariah.nl/stam-python/snapshot Injected (possibly temporary) URI https://tools.clariah.nl/stam-python [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] processed 19 new triples, total is now 28 Processing source #8 of 17 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/39-gitdate.stam-python.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/stam-python [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] overriding old http://schema.org/dateCreated (2023-02-07T13:18:02Z -> 2023-01-31T14:47:01Z+0100) [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] overriding old http://schema.org/dateModified (2024-09-16T12:51:54Z -> 2024-08-29T18:19:39Z+0200) [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] processed 2 new triples, total is now 28 Processing source #9 of 17 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/29-license.stam-python.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/stam-python [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] overriding old http://schema.org/license (http://spdx.org/licenses/GPL-3.0-only -> GPL-3.0-only) [CODEMETA CORRECTION (https://tools.clariah.nl/stam-python)] automatically converting license to spdx URI [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] processed 1 new triples, total is now 28 Processing source #10 of 17 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/23-rust.stam-python.codemeta.json Found main resource with URI https://tools.clariah.nl/cargo.toml/0.9.0 Injected (possibly temporary) URI https://tools.clariah.nl/stam-python [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] overriding old http://schema.org/description (Python binding to work with STAM, the Standoff Text Annotation Model, from Python. Written in Rust. -> STAM is a library for dealing with standoff annotations on text, this is the python binding.) [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] overriding old http://schema.org/keywords (python -> annotation) [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] overriding old http://schema.org/keywords (library -> annotation) [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] overriding old https://codemeta.github.io/terms/readme (https://github.com/annotation/stam-python/blob/v0.9.0//README.md -> https://tools.clariah.nl/README.md) [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] overriding old http://schema.org/softwareHelp (https://stam-python.readthedocs.io -> https://stam-python.readthedocs.io/) [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] overriding old http://schema.org/version (v0.9.0 -> 0.9.0) [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] processed 38 new triples, total is now 52 Processing source #11 of 17 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/20-python.stam-python.codemeta.json Found main resource with URI https://tools.clariah.nl/stam/snapshot Injected (possibly temporary) URI https://tools.clariah.nl/stam-python [CODEMETA COMPOSITION (stam)] overriding old http://schema.org/name (stam-python -> stam) [CODEMETA COMPOSITION (stam)] processed 4 new triples, total is now 54 Processing source #12 of 17 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/11-trl.stam-python.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/stam-python [CODEMETA COMPOSITION (stam)] processed 1 new triples, total is now 55 Processing source #13 of 17 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/11-repostatus.stam-python.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/stam-python [CODEMETA COMPOSITION (stam)] processed 1 new triples, total is now 55 Processing source #14 of 17 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/10-harvest.stam-python.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/stam-python [CODEMETA COMPOSITION (stam)] overriding old http://schema.org/producer (https://tools.clariah.nl/org/annotation -> https://tools.clariah.nl/stub/H3b6d347858fa0f6d) [CODEMETA COMPOSITION (stam)] processed 15 new triples, total is now 69 Processing source #15 of 17 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/05-repostatus.stam-python.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/stam-python [CODEMETA COMPOSITION (stam)] processed 1 new triples, total is now 69 Processing source #16 of 17 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/05-doi.stam-python.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/stam-python [CODEMETA COMPOSITION (stam)] overriding old http://schema.org/identifier (stam -> ) [CODEMETA COMPOSITION (stam)] processed 5 new triples, total is now 73 Processing source #17 of 17 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/04-applicationSuite.stam-python.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/stam-python [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] processed 1 new triples, total is now 74 Remapping URI to (possibly) new identifier and version component: https://tools.clariah.nl/stam-python -> https://tools.clariah.nl/stam-python/0.9.0 [CODEMETA VALIDATION (stam-python)] done [CODEMETA ENRICHMENT (stam-python)] Guessing interface type https://w3id.org/software-types#SoftwareLibrary based on clues [CODEMETA ENRICHMENT (stam-python)] adding author https://tools.clariah.nl/person/maarten-van-gompel as contributor [CODEMETA ENRICHMENT (stam-python)] considering first author as maintainer VALIDATION https://tools.clariah.nl/stam-python/0.9.0 #1: Info: Software source code *SHOULD* link to a continuous integration service that builds the software and runs the software's tests (This is missing in the metadata) VALIDATION https://tools.clariah.nl/stam-python/0.9.0 #2: Warning: Documentation *SHOULD* be expressed (The metadata does express this currently, but something is wrong in the way it is expressed. Is the type/class valid?) VALIDATION https://tools.clariah.nl/stam-python/0.9.0 #3: Info: Reference publications *SHOULD* be expressed, if any (This is missing in the metadata) -- end log -- [harvester info] Output written to /tmp/out/stam-python.codemeta.json [harvester info] <-- Finished processing stam-python (https://github.com/annotation/stam-python) [Wed Sep 18 03:17:04 UTC 2024]