(log file starts at Wed Sep 18 03:17:05 UTC 2024) [harvester info] --> Processing stam-rust (https://github.com/annotation/stam-rust) [Wed Sep 18 03:17:05 UTC 2024] [harvester info] Git updating cached clone of https://github.com/annotation/stam-rust... [harvester info] Found release v0.15.0 [harvester info] Using 'v0.15.0' [harvester info] Git reference: v0.15.0 [harvester info] Scanning directory /tmp/codemeta-harvester.cache/stam-rust for harvestable resources... [harvester info] found codemeta-harvest.json for stam-rust (md5sum 47f7539dabba7c4fffebf125100d8e7a); values in here take precendence over (override) those in later detection stages [harvester info] found Cargo.toml (rust) for stam-rust, converting to codemeta [harvester info] Looking for license.... [harvester info] Found license GPL-3.0-only [harvester info] Getting contributors from git... [harvester info] No git contributors found [harvester info] Getting top contributor from git... [harvester info] Git top contributor will be assigned as author (and maintainer) if none are found in the metadata [harvester info] Extracting last and first commit date from git log.... [harvester info] Date created: 2023-01-03T17:56:32Z+0100, date modified: 2024-08-29T17:38:16Z+0200 [harvester info] Querying Github/GitLab API (https://github.com/annotation/stam-rust) [harvester info] Adding URL for found README: README.md [harvester info] Found releaseNotes [harvester info] Querying Zenodo API for DOI (access token provided)... [harvester info] Found DOI https://doi.org/10.5281/zenodo.13503355 [harvester info] Looking for TRL information in README.md... [harvester info] Found TRL https://w3id.org/research-technology-readiness-levels#Level7ReleaseCandidate [harvester info] Looking for repostatus information in README.md... [harvester info] Found repostatus https://www.repostatus.org/#active [harvester info] Looking for continuous integration information in README.md... [harvester info] Looking for documentation links in README.md... [harvester info] Scraping title from https://docs.rs/stam [harvester info] Found documentation at https://docs.rs/stam : "name": "stam - Rust", [harvester info] Scraping title from https://docs.rs/stam/ [harvester info] Found documentation at https://docs.rs/stam/ : "name": "stam - Rust", [harvester info] Falling back to git tag (v0.15.0) if no version number is specified... [harvester info] Inferring repostatus information from git activity (used only as a fallback if not explicitly provided)... [harvester info] Inferred repostatus https://www.repostatus.org/#active [harvester info] Looking for repostatus information in README.md in master branch... [harvester info] Found repostatus (master branch) https://www.repostatus.org/#active [harvester info] Setting group STAM [harvester info] Reconciliating: codemetapy --baseuri https://tools.clariah.nl --baseuri https://tools.clariah.nl --includecontext --addcontext https://w3id.org/nwo-research-fields --addcontext https://w3id.org/research-technology-readiness-levels --addcontextgraph https://vocabs.dariah.eu/rest/v1/tadirah/data?format=text/turtle --trl --identifier "stam-rust" --codeRepository "https://github.com/annotation/stam-rust" --validate /etc/software.ttl --released --enrich --textv "Please consult the CLARIAH Software Metadata Requirements at https://github.com/CLARIAH/clariah-plus/blob/main/requirements/software-metadata-requirements.md for an in-depth explanation of any found problems" -O /tmp/out/stam-rust.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-version.stam-rust.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-repostatus.stam-rust.codemeta.json /tmp/codemeta-harvester.cache//tmp/90-authors.stam-rust.codemeta.json /tmp/codemeta-harvester.cache//tmp/50-documentation.stam-rust.codemeta.json /tmp/codemeta-harvester.cache//tmp/43-releasenotes.stam-rust.codemeta.json /tmp/codemeta-harvester.cache//tmp/41-readme.stam-rust.codemeta.json /tmp/codemeta-harvester.cache//tmp/40-gitapi.stam-rust.codemeta.json /tmp/codemeta-harvester.cache//tmp/39-gitdate.stam-rust.codemeta.json /tmp/codemeta-harvester.cache//tmp/29-license.stam-rust.codemeta.json /tmp/codemeta-harvester.cache//tmp/23-rust.stam-rust.codemeta.json /tmp/codemeta-harvester.cache//tmp/11-trl.stam-rust.codemeta.json /tmp/codemeta-harvester.cache//tmp/11-repostatus.stam-rust.codemeta.json /tmp/codemeta-harvester.cache//tmp/10-harvest.stam-rust.codemeta.json /tmp/codemeta-harvester.cache//tmp/05-repostatus.stam-rust.codemeta.json /tmp/codemeta-harvester.cache//tmp/05-doi.stam-rust.codemeta.json /tmp/codemeta-harvester.cache//tmp/04-applicationSuite.stam-rust.codemeta.json -- begin log -- Passed 16 files/sources but specified 0 input types! Automatically guessing types... Detected input types: [('/tmp/codemeta-harvester.cache//tmp/99-version.stam-rust.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/99-repostatus.stam-rust.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/90-authors.stam-rust.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/50-documentation.stam-rust.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/43-releasenotes.stam-rust.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/41-readme.stam-rust.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/40-gitapi.stam-rust.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/39-gitdate.stam-rust.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/29-license.stam-rust.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/23-rust.stam-rust.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/11-trl.stam-rust.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/11-repostatus.stam-rust.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/10-harvest.stam-rust.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/05-repostatus.stam-rust.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/05-doi.stam-rust.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/04-applicationSuite.stam-rust.codemeta.json', 'json')] Adding to contextgraph: /tmp/turtle Initial URI automatically generated, may be overriden later: https://tools.clariah.nl/stam-rust Processing source #1 of 16 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-version.stam-rust.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/stam-rust [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-rust)] processed 1 new triples, total is now 2 Processing source #2 of 16 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-repostatus.stam-rust.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/stam-rust [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-rust)] processed 1 new triples, total is now 3 Processing source #3 of 16 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/90-authors.stam-rust.codemeta.json Found main resource with URI https://tools.clariah.nl/stam-rust.topcontributor/snapshot Injected (possibly temporary) URI https://tools.clariah.nl/stam-rust [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-rust)] processed 1 new triples, total is now 3 Processing source #4 of 16 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/50-documentation.stam-rust.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/stam-rust [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-rust)] processed 8 new triples, total is now 11 Processing source #5 of 16 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/43-releasenotes.stam-rust.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/stam-rust [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-rust)] processed 2 new triples, total is now 13 Processing source #6 of 16 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/41-readme.stam-rust.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/stam-rust [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-rust)] processed 1 new triples, total is now 14 Processing source #7 of 16 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/40-gitapi.stam-rust.codemeta.json Found main resource with URI https://tools.clariah.nl/stam-rust/snapshot Injected (possibly temporary) URI https://tools.clariah.nl/stam-rust [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-rust)] processed 20 new triples, total is now 33 Processing source #8 of 16 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/39-gitdate.stam-rust.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/stam-rust [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-rust)] overriding old http://schema.org/dateCreated (2023-01-03T12:34:52Z -> 2023-01-03T17:56:32Z+0100) [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-rust)] overriding old http://schema.org/dateModified (2024-09-17T09:08:39Z -> 2024-08-29T17:38:16Z+0200) [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-rust)] processed 2 new triples, total is now 33 Processing source #9 of 16 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/29-license.stam-rust.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/stam-rust [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-rust)] overriding old http://schema.org/license (http://spdx.org/licenses/GPL-3.0-only -> GPL-3.0-only) [CODEMETA CORRECTION (https://tools.clariah.nl/stam-rust)] automatically converting license to spdx URI [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-rust)] processed 1 new triples, total is now 33 Processing source #10 of 16 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/23-rust.stam-rust.codemeta.json Found main resource with URI https://tools.clariah.nl/cargo.toml/0.15.0 Injected (possibly temporary) URI https://tools.clariah.nl/stam-rust [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-rust)] overriding old http://schema.org/description (Programming library for the Standoff Text Annotation Model (STAM), written in Rust. This is the primary software library for STAM with a focus on performance. -> STAM is a powerful library for dealing with stand-off annotations on text. This is the Rust library.) [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-rust)] overriding old http://schema.org/keywords (text -> annotation) [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-rust)] overriding old http://schema.org/keywords (rust -> annotation) [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-rust)] overriding old http://schema.org/keywords (library -> annotation) [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-rust)] overriding old http://schema.org/name (stam-rust -> stam) [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-rust)] overriding old https://codemeta.github.io/terms/readme (https://github.com/annotation/stam-rust/blob/v0.15.0//README.md -> https://tools.clariah.nl/README.md) [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-rust)] overriding old http://schema.org/softwareHelp (https://docs.rs/stam/ -> https://docs.rs/stam) [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-rust)] overriding old http://schema.org/softwareHelp (https://docs.rs/stam -> https://docs.rs/stam) [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-rust)] overriding old http://schema.org/url (https://annotation.github.io/stam -> https://github.com/annotation/stam) [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-rust)] overriding old http://schema.org/version (v0.15.0 -> 0.15.0) [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-rust)] processed 93 new triples, total is now 110 Processing source #11 of 16 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/11-trl.stam-rust.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/stam-rust [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-rust)] processed 1 new triples, total is now 111 Processing source #12 of 16 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/11-repostatus.stam-rust.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/stam-rust [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-rust)] processed 1 new triples, total is now 111 Processing source #13 of 16 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/10-harvest.stam-rust.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/stam-rust [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-rust)] overriding old http://schema.org/producer (https://tools.clariah.nl/org/annotation -> https://tools.clariah.nl/stub/H6a3da11449bfbb57) [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-rust)] processed 15 new triples, total is now 125 Processing source #14 of 16 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/05-repostatus.stam-rust.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/stam-rust [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-rust)] processed 1 new triples, total is now 125 Processing source #15 of 16 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/05-doi.stam-rust.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/stam-rust [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-rust)] processed 5 new triples, total is now 130 Processing source #16 of 16 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/04-applicationSuite.stam-rust.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/stam-rust [CODEMETA COMPOSITION (https://tools.clariah.nl/stam-rust)] processed 1 new triples, total is now 131 Remapping URI to (possibly) new identifier and version component: https://tools.clariah.nl/stam-rust -> https://tools.clariah.nl/stam-rust/0.15.0 [CODEMETA VALIDATION (stam-rust)] done [CODEMETA ENRICHMENT (stam-rust)] Guessing interface type https://w3id.org/software-types#SoftwareLibrary based on clues [CODEMETA ENRICHMENT (stam-rust)] adding author https://tools.clariah.nl/person/maarten-van-gompel as contributor [CODEMETA ENRICHMENT (stam-rust)] considering first author as maintainer VALIDATION https://tools.clariah.nl/stam-rust/0.15.0 #1: Info: Software source code *SHOULD* link to a continuous integration service that builds the software and runs the software's tests (This is missing in the metadata) VALIDATION https://tools.clariah.nl/stam-rust/0.15.0 #2: Warning: Documentation *SHOULD* be expressed (The metadata does express this currently, but something is wrong in the way it is expressed. Is the type/class valid?) VALIDATION https://tools.clariah.nl/stam-rust/0.15.0 #3: Info: Reference publications *SHOULD* be expressed, if any (This is missing in the metadata) -- end log -- [harvester info] Output written to /tmp/out/stam-rust.codemeta.json [harvester info] <-- Finished processing stam-rust (https://github.com/annotation/stam-rust) [Wed Sep 18 03:17:17 UTC 2024]