(log file starts at Wed Sep 18 03:18:42 UTC 2024) [harvester info] --> Processing timbuctoo (https://github.com/HuygensING/timbuctoo) [Wed Sep 18 03:18:42 UTC 2024] [harvester info] Git updating cached clone of https://github.com/HuygensING/timbuctoo... [harvester info] Found release v7.15 [harvester info] Using 'v7.15' [harvester info] Git reference: v7.15 [harvester info] Scanning directory /tmp/codemeta-harvester.cache/timbuctoo for harvestable resources... [harvester info] found pom.xml (Java/Maven) for timbuctoo, converting to codemeta [harvester info] Looking for license.... [harvester info] Found license GPL-3.0-only [harvester info] Getting contributors from git... [harvester info] Getting top contributor from git... [harvester info] Git top contributor kerim1 will be assigned as author (and maintainer) if none are found in the metadata [harvester info] Extracting last and first commit date from git log.... [harvester info] Date created: 2012-08-15T14:23:19Z+0000, date modified: 2024-03-01T10:25:59Z+0100 [harvester info] Querying Github/GitLab API (https://github.com/HuygensING/timbuctoo) [harvester info] Adding URL for found README: README.adoc [harvester info] Found releaseNotes [harvester info] Querying Zenodo API for DOI (access token provided)... [harvester info] Looking for TRL information in README.adoc... [harvester info] Looking for repostatus information in README.adoc... [harvester info] Looking for continuous integration information in README.adoc... [harvester info] Looking for documentation links in README.adoc... [harvester info] Scraping title from https://github.com/HuygensING/timbuctoo/blob/master/documentation/timbuctoo-graphql-api-guide.adoc[this [harvester info] Found documentation at https://github.com/HuygensING/timbuctoo/blob/master/documentation/timbuctoo-graphql-api-guide.adoc[this : [harvester info] Falling back to git tag (v7.15) if no version number is specified... [harvester info] Inferring repostatus information from git activity (used only as a fallback if not explicitly provided)... [harvester info] Inferred repostatus https://www.repostatus.org/#active [harvester info] Looking for repostatus information in README.adoc in master branch... [harvester info] Reconciliating: codemetapy --baseuri https://tools.clariah.nl --baseuri https://tools.clariah.nl --includecontext --addcontext https://w3id.org/nwo-research-fields --addcontext https://w3id.org/research-technology-readiness-levels --addcontextgraph https://vocabs.dariah.eu/rest/v1/tadirah/data?format=text/turtle --trl --identifier "timbuctoo" --codeRepository "https://github.com/HuygensING/timbuctoo" --validate /etc/software.ttl --released --enrich --textv "Please consult the CLARIAH Software Metadata Requirements at https://github.com/CLARIAH/clariah-plus/blob/main/requirements/software-metadata-requirements.md for an in-depth explanation of any found problems" -O /tmp/out/timbuctoo.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-version.timbuctoo.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-repostatus.timbuctoo.codemeta.json /tmp/codemeta-harvester.cache//tmp/90-authors.timbuctoo.codemeta.json /tmp/codemeta-harvester.cache//tmp/50-documentation.timbuctoo.codemeta.json /tmp/codemeta-harvester.cache//tmp/43-releasenotes.timbuctoo.codemeta.json /tmp/codemeta-harvester.cache//tmp/41-readme.timbuctoo.codemeta.json /tmp/codemeta-harvester.cache//tmp/40-gitapi.timbuctoo.codemeta.json /tmp/codemeta-harvester.cache//tmp/39-gitdate.timbuctoo.codemeta.json /tmp/codemeta-harvester.cache//tmp/32-contributors.timbuctoo.codemeta.json /tmp/codemeta-harvester.cache//tmp/29-license.timbuctoo.codemeta.json /tmp/codemeta-harvester.cache//tmp/21-java.timbuctoo.codemeta.json -- begin log -- Passed 11 files/sources but specified 0 input types! Automatically guessing types... Detected input types: [('/tmp/codemeta-harvester.cache//tmp/99-version.timbuctoo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/99-repostatus.timbuctoo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/90-authors.timbuctoo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/50-documentation.timbuctoo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/43-releasenotes.timbuctoo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/41-readme.timbuctoo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/40-gitapi.timbuctoo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/39-gitdate.timbuctoo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/32-contributors.timbuctoo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/29-license.timbuctoo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/21-java.timbuctoo.codemeta.json', 'json')] Adding to contextgraph: /tmp/turtle Initial URI automatically generated, may be overriden later: https://tools.clariah.nl/timbuctoo Processing source #1 of 11 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-version.timbuctoo.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/timbuctoo [CODEMETA COMPOSITION (https://tools.clariah.nl/timbuctoo)] processed 1 new triples, total is now 2 Processing source #2 of 11 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-repostatus.timbuctoo.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/timbuctoo [CODEMETA COMPOSITION (https://tools.clariah.nl/timbuctoo)] processed 1 new triples, total is now 3 Processing source #3 of 11 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/90-authors.timbuctoo.codemeta.json Found main resource with URI https://tools.clariah.nl/timbuctoo.topcontributor/snapshot Injected (possibly temporary) URI https://tools.clariah.nl/timbuctoo [CODEMETA COMPOSITION (https://tools.clariah.nl/timbuctoo)] processed 8 new triples, total is now 10 Processing source #4 of 11 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/50-documentation.timbuctoo.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/timbuctoo [CODEMETA COMPOSITION (https://tools.clariah.nl/timbuctoo)] processed 3 new triples, total is now 13 Processing source #5 of 11 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/43-releasenotes.timbuctoo.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/timbuctoo [CODEMETA COMPOSITION (https://tools.clariah.nl/timbuctoo)] processed 2 new triples, total is now 15 Processing source #6 of 11 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/41-readme.timbuctoo.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/timbuctoo [CODEMETA COMPOSITION (https://tools.clariah.nl/timbuctoo)] processed 1 new triples, total is now 16 Processing source #7 of 11 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/40-gitapi.timbuctoo.codemeta.json Found main resource with URI https://tools.clariah.nl/timbuctoo/snapshot Injected (possibly temporary) URI https://tools.clariah.nl/timbuctoo [CODEMETA COMPOSITION (https://tools.clariah.nl/timbuctoo)] processed 19 new triples, total is now 34 Processing source #8 of 11 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/39-gitdate.timbuctoo.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/timbuctoo [CODEMETA COMPOSITION (https://tools.clariah.nl/timbuctoo)] overriding old http://schema.org/dateCreated (2013-12-18T13:37:39Z -> 2012-08-15T14:23:19Z+0000) [CODEMETA COMPOSITION (https://tools.clariah.nl/timbuctoo)] overriding old http://schema.org/dateModified (2024-05-01T16:41:57Z -> 2024-03-01T10:25:59Z+0100) [CODEMETA COMPOSITION (https://tools.clariah.nl/timbuctoo)] processed 2 new triples, total is now 34 Processing source #9 of 11 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/32-contributors.timbuctoo.codemeta.json Found main resource with URI https://tools.clariah.nl/timbuctoo.contributors/snapshot Injected (possibly temporary) URI https://tools.clariah.nl/timbuctoo [CODEMETA COMPOSITION (https://tools.clariah.nl/timbuctoo)] processed 8 new triples, total is now 35 Processing source #10 of 11 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/29-license.timbuctoo.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/timbuctoo [CODEMETA COMPOSITION (https://tools.clariah.nl/timbuctoo)] overriding old http://schema.org/license (http://spdx.org/licenses/GPL-3.0-only -> GPL-3.0-only) [CODEMETA CORRECTION (https://tools.clariah.nl/timbuctoo)] automatically converting license to spdx URI [CODEMETA COMPOSITION (https://tools.clariah.nl/timbuctoo)] processed 1 new triples, total is now 35 Processing source #11 of 11 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/21-java.timbuctoo.codemeta.json Found main resource with URI https://tools.clariah.nl/nl.knaw.huygens.timbuctoo/7.15 Injected (possibly temporary) URI https://tools.clariah.nl/timbuctoo [CODEMETA COMPOSITION (nl.knaw.huygens.timbuctoo)] overriding old http://schema.org/author (https://tools.clariah.nl/stub/H0f5750d8cc69c23c -> https://tools.clariah.nl/stub/H732960632376a6e5) [CODEMETA COMPOSITION (nl.knaw.huygens.timbuctoo)] overriding old http://schema.org/description (an RDF datastore that gives researchers control over the sharing of data between datasets -> An RDF datastore that gives researchers control over the sharing of data between datasets ) [CODEMETA COMPOSITION (nl.knaw.huygens.timbuctoo)] overriding old http://schema.org/license (http://spdx.org/licenses/GPL-3.0-only -> http://www.gnu.org/licenses/gpl.txt) [CODEMETA COMPOSITION (nl.knaw.huygens.timbuctoo)] overriding old http://schema.org/name (timbuctoo -> Timbuctoo) [CODEMETA COMPOSITION (nl.knaw.huygens.timbuctoo)] overriding old http://schema.org/producer (https://tools.clariah.nl/org/huygens-instituut-knaw -> https://tools.clariah.nl/org/huygens-ing) [CODEMETA COMPOSITION (nl.knaw.huygens.timbuctoo)] overriding old http://schema.org/version (v7.15 -> 7.15) [CODEMETA COMPOSITION (nl.knaw.huygens.timbuctoo)] processed 233 new triples, total is now 261 Remapping URI to (possibly) new identifier and version component: https://tools.clariah.nl/timbuctoo -> https://tools.clariah.nl/timbuctoo/7.15 [CODEMETA VALIDATION (timbuctoo)] done [CODEMETA ENRICHMENT (timbuctoo)] considering first author as maintainer VALIDATION https://tools.clariah.nl/timbuctoo/7.15 #1: Info: Software source code *SHOULD* link to a continuous integration service that builds the software and runs the software's tests (This is missing in the metadata) VALIDATION https://tools.clariah.nl/timbuctoo/7.15 #2: Info: An interface type *SHOULD* be expressed: Software source code should define one or more target products that are the resulting software applications offering specific interfaces (This is missing in the metadata) VALIDATION https://tools.clariah.nl/timbuctoo/7.15 #3: Info: Reference publications *SHOULD* be expressed, if any (This is missing in the metadata) VALIDATION https://tools.clariah.nl/timbuctoo/7.15 #4: Info: The funder *SHOULD* be acknowledged (This is missing in the metadata) VALIDATION https://tools.clariah.nl/timbuctoo/7.15 #5: Info: The technology readiness level *SHOULD* be expressed (This is missing in the metadata) -- end log -- [harvester info] Output written to /tmp/out/timbuctoo.codemeta.json [harvester info] <-- Finished processing timbuctoo (https://github.com/HuygensING/timbuctoo) [Wed Sep 18 03:18:58 UTC 2024]