(log file starts at Wed Sep 18 03:19:10 UTC 2024) [harvester info] --> Processing tool-discovery (https://github.com/CLARIAH/tool-discovery) [Wed Sep 18 03:19:10 UTC 2024] [harvester info] Git updating cached clone of https://github.com/CLARIAH/tool-discovery... [harvester info] Found release v1.6.4 [harvester info] Using 'v1.6.4' [harvester info] Git reference: v1.6.4 [harvester info] Scanning directory /tmp/codemeta-harvester.cache/tool-discovery for harvestable resources... [harvester info] found codemeta.json for tool-discovery (md5sum 0be02e21d345b9926f5249d67fd0c0e5); **NOTE: this is considered authoritative and most other detection methods will be skipped now!** [harvester info] Inferring repostatus information from git activity (used only as a fallback if not explicitly provided)... [harvester info] Inferred repostatus https://www.repostatus.org/#active [harvester info] Looking for repostatus information in README.md in master branch... [harvester info] Found repostatus (master branch) https://www.repostatus.org/#active [harvester info] Setting group CLARIAH Tool Discovery [harvester info] Reconciliating: codemetapy --baseuri https://tools.clariah.nl --baseuri https://tools.clariah.nl --includecontext --addcontext https://w3id.org/nwo-research-fields --addcontext https://w3id.org/research-technology-readiness-levels --addcontextgraph https://vocabs.dariah.eu/rest/v1/tadirah/data?format=text/turtle --trl --identifier "tool-discovery" --codeRepository "https://github.com/CLARIAH/tool-discovery" --validate /etc/software.ttl --released --enrich --textv "Please consult the CLARIAH Software Metadata Requirements at https://github.com/CLARIAH/clariah-plus/blob/main/requirements/software-metadata-requirements.md for an in-depth explanation of any found problems" -O /tmp/out/tool-discovery.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-repostatus.tool-discovery.codemeta.json /tmp/codemeta-harvester.cache//tmp/10-jsonld.tool-discovery.codemeta.json /tmp/codemeta-harvester.cache//tmp/05-repostatus.tool-discovery.codemeta.json /tmp/codemeta-harvester.cache//tmp/04-applicationSuite.tool-discovery.codemeta.json -- begin log -- Passed 4 files/sources but specified 0 input types! Automatically guessing types... Detected input types: [('/tmp/codemeta-harvester.cache//tmp/99-repostatus.tool-discovery.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/10-jsonld.tool-discovery.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/05-repostatus.tool-discovery.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/04-applicationSuite.tool-discovery.codemeta.json', 'json')] Adding to contextgraph: /tmp/turtle Initial URI automatically generated, may be overriden later: https://tools.clariah.nl/tool-discovery Processing source #1 of 4 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-repostatus.tool-discovery.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/tool-discovery [CODEMETA COMPOSITION (https://tools.clariah.nl/tool-discovery)] processed 1 new triples, total is now 2 Processing source #2 of 4 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/10-jsonld.tool-discovery.codemeta.json Found main resource with URI https://github.com/CLARIAH/tool-discovery.git Injected (possibly temporary) URI https://tools.clariah.nl/tool-discovery [CODEMETA CORRECTION (tool-discovery)] automatically converting spdx license URI from https:// to http:/// [CODEMETA COMPOSITION (tool-discovery)] processed 93 new triples, total is now 93 Processing source #3 of 4 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/05-repostatus.tool-discovery.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/tool-discovery [CODEMETA COMPOSITION (tool-discovery)] processed 1 new triples, total is now 93 Processing source #4 of 4 Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/04-applicationSuite.tool-discovery.codemeta.json NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically... Injected (possibly temporary) URI https://tools.clariah.nl/tool-discovery [CODEMETA COMPOSITION (tool-discovery)] processed 1 new triples, total is now 94 Remapping URI to (possibly) new identifier and version component: https://tools.clariah.nl/tool-discovery -> https://tools.clariah.nl/tool-discovery/1.6.4 [CODEMETA VALIDATION (tool-discovery)] done [CODEMETA ENRICHMENT (tool-discovery)] adding author https://orcid.org/0000-0002-1046-0006 as contributor VALIDATION https://tools.clariah.nl/tool-discovery/1.6.4 #1: Info: Reference publications *SHOULD* be expressed, if any (This is missing in the metadata) -- end log -- [harvester info] Output written to /tmp/out/tool-discovery.codemeta.json [harvester info] Harvesting remote service URL https://tools.clariah.nl for tool-discovery: codemetapy --baseuri https://tools.clariah.nl --baseuri https://tools.clariah.nl --includecontext --addcontext https://w3id.org/nwo-research-fields --addcontext https://w3id.org/research-technology-readiness-levels --addcontextgraph https://vocabs.dariah.eu/rest/v1/tadirah/data?format=text/turtle --trl -O "/tmp/codemeta-harvester.cache//tmp/tool-discovery.codemeta.json" "/tmp/out/tool-discovery.codemeta.json" "https://tools.clariah.nl" [harvester info] <-- Finished processing tool-discovery (https://github.com/CLARIAH/tool-discovery) [Wed Sep 18 03:19:18 UTC 2024]