hypodisc

Hypothesis Discovery on RDF Knowledge Graphs

Provided tools & services

hypodisc

Type
  • Unknown

Citation

You can cite this software using the following citation generated from its metadata:

Logs & Reviews

Name
Automatic software metadata validation report for hypodisc 0.1.0
Author
  • codemetapy validator using software.ttl
Date
2024-02-25 03:12:49
Review
Please consult the CLARIAH Software Metadata Requirements at https://github.com/CLARIAH/clariah-plus/blob/main/requirements/software-metadata-requirements.md for an in-depth explanation of any found problems

Validation of hypodisc 0.1.0 was successful (score=3/5), but there are some warnings which should be addressed:

1. Info: Software source code *SHOULD* link to a continuous integration service that builds the software and runs the software's tests (This is missing in the metadata)
2. Info: An interface type *SHOULD* be expressed: Software source code should define one or more target products that are the resulting software applications offering specific interfaces (The metadata does express this currently, but something is wrong in the way it is expressed. Is the type/class valid?)
3. Warning: Documentation *SHOULD* be expressed (This is missing in the metadata)
4. Info: Reference publications *SHOULD* be expressed, if any (This is missing in the metadata)
5. Info: The funder *SHOULD* be acknowledged (This is missing in the metadata)
6. Info: The technology readiness level *SHOULD* be expressed (This is missing in the metadata)
Rating
★ ★ ★ ☆ ☆
(log file starts at Sun Feb 25 03:12:31 UTC 2024)

[harvester info] --> Processing hypodisc (https://github.com/wxwilcke/hypodisc) [Sun Feb 25 03:12:31 UTC 2024]

[harvester info] Git updating cached clone of https://github.com/wxwilcke/hypodisc...

[harvester info] No releases found, falling back to default git branch!

[harvester info] Using 'main'

[harvester info] Git reference: main

[harvester info] Scanning directory /tmp/codemeta-harvester.cache/hypodisc for harvestable resources...

[harvester info] found python setup for hypodisc, converting to codemeta

[harvester info] Looking for license....

[harvester info] Found license GPL-3.0-only

[harvester info] Getting contributors from git...

[harvester info] Getting top contributor from git...

[harvester info] Git top contributor Xander Wilcke <w.x.wilcke@vu.nl> will be assigned as author (and maintainer) if none are found in the metadata

[harvester info] Extracting last and first commit date from git log....

[harvester info] Date created: 2023-07-27T14:09:41Z+0200, date modified: 2024-02-14T12:37:55Z+0100

[harvester info] Querying Github/GitLab API (https://github.com/wxwilcke/hypodisc)

[harvester info] Adding URL for found README: README.md

[harvester info] Looking for TRL information in README.md...

[harvester info] Looking for repostatus information in README.md...

[harvester info] Looking for continuous integration information in README.md...

[harvester info] Looking for documentation links in README.md...

[harvester info] Inferring repostatus information from git activity (used only as a fallback if not explicitly provided)...

[harvester info] Inferred repostatus https://www.repostatus.org/#active

[harvester info] Reconciliating: codemetapy  --baseuri https://tools.clariah.nl --baseuri https://tools.clariah.nl --includecontext --addcontext https://w3id.org/nwo-research-fields --addcontext https://w3id.org/research-technology-readiness-levels --addcontextgraph https://vocabs.dariah.eu/rest/v1/tadirah/data?format=text/turtle --trl --identifier "hypodisc" --codeRepository "https://github.com/wxwilcke/hypodisc" --validate /etc/software.ttl --enrich --textv "Please consult the CLARIAH Software Metadata Requirements at https://github.com/CLARIAH/clariah-plus/blob/main/requirements/software-metadata-requirements.md for an in-depth explanation of any found problems" -O /tmp/out/hypodisc.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-repostatus.hypodisc.codemeta.json /tmp/codemeta-harvester.cache//tmp/90-authors.hypodisc.codemeta.json /tmp/codemeta-harvester.cache//tmp/41-readme.hypodisc.codemeta.json /tmp/codemeta-harvester.cache//tmp/40-gitapi.hypodisc.codemeta.json /tmp/codemeta-harvester.cache//tmp/39-gitdate.hypodisc.codemeta.json /tmp/codemeta-harvester.cache//tmp/32-contributors.hypodisc.codemeta.json /tmp/codemeta-harvester.cache//tmp/29-license.hypodisc.codemeta.json /tmp/codemeta-harvester.cache//tmp/20-python.hypodisc.codemeta.json 

-- begin log --

Passed 8 files/sources but specified 0 input types! Automatically guessing types...

Detected input types: [('/tmp/codemeta-harvester.cache//tmp/99-repostatus.hypodisc.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/90-authors.hypodisc.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/41-readme.hypodisc.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/40-gitapi.hypodisc.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/39-gitdate.hypodisc.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/32-contributors.hypodisc.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/29-license.hypodisc.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/20-python.hypodisc.codemeta.json', 'json')]

Adding to contextgraph: /tmp/turtle

Initial URI automatically generated, may be overriden later: https://tools.clariah.nl/hypodisc

Processing source #1 of 8

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-repostatus.hypodisc.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/hypodisc

[CODEMETA COMPOSITION (https://tools.clariah.nl/hypodisc)] processed 1 new triples, total is now 2

Processing source #2 of 8

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/90-authors.hypodisc.codemeta.json

    Found main resource with URI https://tools.clariah.nl/hypodisc.topcontributor/snapshot

    Injected (possibly temporary) URI https://tools.clariah.nl/hypodisc

[CODEMETA COMPOSITION (https://tools.clariah.nl/hypodisc)] processed 8 new triples, total is now 9

Processing source #3 of 8

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/41-readme.hypodisc.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/hypodisc

[CODEMETA COMPOSITION (https://tools.clariah.nl/hypodisc)] processed 1 new triples, total is now 10

Processing source #4 of 8

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/40-gitapi.hypodisc.codemeta.json

    Found main resource with URI https://tools.clariah.nl/hypodisc/snapshot

    Injected (possibly temporary) URI https://tools.clariah.nl/hypodisc

[CODEMETA COMPOSITION (https://tools.clariah.nl/hypodisc)] overriding old http://schema.org/author (https://tools.clariah.nl/stub/H0f6665bde7ff9b86 -> https://tools.clariah.nl/stub/H-632438b071c09ac3)

[CODEMETA COMPOSITION (https://tools.clariah.nl/hypodisc)] processed 19 new triples, total is now 24

Processing source #5 of 8

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/39-gitdate.hypodisc.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/hypodisc

[CODEMETA COMPOSITION (https://tools.clariah.nl/hypodisc)] overriding old http://schema.org/dateCreated (2023-08-14T16:04:41Z -> 2023-07-27T14:09:41Z+0200)

[CODEMETA COMPOSITION (https://tools.clariah.nl/hypodisc)] overriding old http://schema.org/dateModified (2024-02-14T11:38:15Z -> 2024-02-14T12:37:55Z+0100)

[CODEMETA COMPOSITION (https://tools.clariah.nl/hypodisc)] processed 2 new triples, total is now 24

Processing source #6 of 8

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/32-contributors.hypodisc.codemeta.json

    Found main resource with URI https://tools.clariah.nl/hypodisc.contributors/snapshot

    Injected (possibly temporary) URI https://tools.clariah.nl/hypodisc

[CODEMETA COMPOSITION (https://tools.clariah.nl/hypodisc)] processed 8 new triples, total is now 25

Processing source #7 of 8

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/29-license.hypodisc.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/hypodisc

[CODEMETA COMPOSITION (https://tools.clariah.nl/hypodisc)] overriding old http://schema.org/license (http://spdx.org/licenses/GPL-3.0-only -> GPL-3.0-only)

[CODEMETA CORRECTION (https://tools.clariah.nl/hypodisc)] automatically converting license to spdx URI

[CODEMETA COMPOSITION (https://tools.clariah.nl/hypodisc)] processed 1 new triples, total is now 25

Processing source #8 of 8

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/20-python.hypodisc.codemeta.json

    Found main resource with URI https://tools.clariah.nl/hypodisc/0.1.0

    Injected (possibly temporary) URI https://tools.clariah.nl/hypodisc

[CODEMETA COMPOSITION (hypodisc)] overriding old http://schema.org/author (https://tools.clariah.nl/stub/H-632438b071c09ac3 -> https://tools.clariah.nl/stub/H7682b03adb35b247)

[CODEMETA COMPOSITION (hypodisc)] overriding old https://codemeta.github.io/terms/issueTracker (https://github.com/wxwilcke/hypodisc/issues -> https://gitlab.com/wxwilcke/hypodisc/-/issues)

[CODEMETA COMPOSITION (hypodisc)] overriding old http://schema.org/license (http://spdx.org/licenses/GPL-3.0-only -> http://spdx.org/licenses/AGPL-3.0-only)

[CODEMETA COMPOSITION (hypodisc)] processed 58 new triples, total is now 75

Remapping URI to (possibly) new identifier and version component: https://tools.clariah.nl/hypodisc -> https://tools.clariah.nl/hypodisc/0.1.0

[CODEMETA VALIDATION (hypodisc)] done

[CODEMETA ENRICHMENT (hypodisc)] Guessing interface type https://w3id.org/software-types#WebApplication based on clues

[CODEMETA ENRICHMENT (hypodisc)] automatically adding programmingLanguage Python derived from runtimePlatform Python

[CODEMETA ENRICHMENT (hypodisc)] adding affiliation(s) of first author as producer

VALIDATION https://tools.clariah.nl/hypodisc/0.1.0 #1: Info: Software source code *SHOULD* link to a continuous integration service that builds the software and runs the software's tests (This is missing in the metadata)

VALIDATION https://tools.clariah.nl/hypodisc/0.1.0 #2: Info: An interface type *SHOULD* be expressed: Software source code should define one or more target products that are the resulting software applications offering specific interfaces (The metadata does express this currently, but something is wrong in the way it is expressed. Is the type/class valid?)

VALIDATION https://tools.clariah.nl/hypodisc/0.1.0 #3: Warning: Documentation *SHOULD* be expressed (This is missing in the metadata)

VALIDATION https://tools.clariah.nl/hypodisc/0.1.0 #4: Info: Reference publications *SHOULD* be expressed, if any (This is missing in the metadata)

VALIDATION https://tools.clariah.nl/hypodisc/0.1.0 #5: Info: The funder *SHOULD* be acknowledged (This is missing in the metadata)

VALIDATION https://tools.clariah.nl/hypodisc/0.1.0 #6: Info: The technology readiness level *SHOULD* be expressed (This is missing in the metadata)

-- end log --

[harvester info] Output written to /tmp/out/hypodisc.codemeta.json

[harvester info] <-- Finished processing hypodisc (https://github.com/wxwilcke/hypodisc) [Sun Feb 25 03:12:49 UTC 2024]

        

Metadata Properties

Version
0.1.0
Interface types
  • Unknown
Software website
Source code repository
 https://github.com/wxwilcke/hypodisc  Stars are an indicator of the popularity of this project on GitHub
Keywords
  • hypothesis generation
  • knowledge graphs
  • pattern discovery
  • rdf
Development Status
  • Active: The project has reached a stable, usable state and is being actively developed.
Issue Tracker (Support)
https://gitlab.com/wxwilcke/hypodisc/-/issues  The number of open issues on the issue tracker  The number of closes issues on the issue tracker
Documentation
License
Author(s)
Maintainer(s)
Contributor(s)
Producer
  •   VU University Amsterdam
Programming Language
  • Python
Runtime Platform
  • Python 3
Operating System
  • OS Independent
Software dependencies
  • flask
  • numpy
  • pyRDF
  • scikit-learn
  • scipy
  • toml
  • typing-extensions
Metadata validation
★ ★ ★ ☆ ☆
Created
2023-07-27 14:09:41 +0200
Last modified
2024-02-14 12:37:55 +0100  Last commit (main branch). Gives an indication of project development activity and rough indication of how up-to-date the latest release is.  Number of commits since the last release. Gives an indication of project development activity and rough indication of how up-to-date the latest release is.