# description
Hypothesis Discovery on RDF Knowledge Graphs

# developmentStatus.skos:definition
The project has reached a stable, usable state and is being actively developed.

# https://github.com/proycon/codemetapy/log
(log file starts at Thu Dec 26 03:09:15 UTC 2024)

[harvester info] --> Processing hypodisc (https://github.com/wxwilcke/hypodisc) [Thu Dec 26 03:09:15 UTC 2024]

[harvester info] Git updating cached clone of https://github.com/wxwilcke/hypodisc...

[harvester info] Found release 1.0.0

[harvester info] Using '1.0.0'

[harvester info] Git reference: 1.0.0

[harvester info] Scanning directory /tmp/codemeta-harvester.cache/hypodisc for harvestable resources...

[harvester info] found python setup for hypodisc, converting to codemeta

[harvester info] Looking for license....

[harvester info] Found license GPL-3.0-only

[harvester info] Getting contributors from git...

[harvester info] Getting top contributor from git...

[harvester info] Git top contributor Xander Wilcke <w.x.wilcke@vu.nl> will be assigned as author (and maintainer) if none are found in the metadata

[harvester info] Extracting last and first commit date from git log....

[harvester info] Date created: 2023-07-27T14:09:41Z+0200, date modified: 2024-10-17T17:10:45Z+0200

[harvester info] Querying Github/GitLab API (https://github.com/wxwilcke/hypodisc)

[harvester info] Adding URL for found README: README.md

[harvester info] Found releaseNotes

[harvester info] Querying Zenodo API for DOI (access token provided)...

[harvester info] Looking for TRL information in README.md...

[harvester info] Looking for repostatus information in README.md...

[harvester info] Looking for continuous integration information in README.md...

[harvester info] Looking for documentation links in README.md...

[harvester info] Falling back to git tag (1.0.0) if no version number is specified...

[harvester info] Inferring repostatus information from git activity (used only as a fallback if not explicitly provided)...

[harvester info] Inferred repostatus https://www.repostatus.org/#active

[harvester info] Looking for repostatus information in README.md in master branch...

[harvester info] Reconciliating: codemetapy  --baseuri https://tools.clariah.nl --baseuri https://tools.clariah.nl --includecontext --addcontext https://w3id.org/nwo-research-fields --addcontext https://w3id.org/research-technology-readiness-levels --addcontextgraph https://vocabs.dariah.eu/rest/v1/tadirah/data?format=text/turtle --trl --identifier "hypodisc" --codeRepository "https://github.com/wxwilcke/hypodisc" --validate /etc/software.ttl --released --enrich --textv "Please consult the CLARIAH Software Metadata Requirements at https://github.com/CLARIAH/clariah-plus/blob/main/requirements/software-metadata-requirements.md for an in-depth explanation of any found problems" -O /tmp/out/hypodisc.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-version.hypodisc.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-repostatus.hypodisc.codemeta.json /tmp/codemeta-harvester.cache//tmp/90-authors.hypodisc.codemeta.json /tmp/codemeta-harvester.cache//tmp/43-releasenotes.hypodisc.codemeta.json /tmp/codemeta-harvester.cache//tmp/41-readme.hypodisc.codemeta.json /tmp/codemeta-harvester.cache//tmp/40-gitapi.hypodisc.codemeta.json /tmp/codemeta-harvester.cache//tmp/39-gitdate.hypodisc.codemeta.json /tmp/codemeta-harvester.cache//tmp/32-contributors.hypodisc.codemeta.json /tmp/codemeta-harvester.cache//tmp/29-license.hypodisc.codemeta.json /tmp/codemeta-harvester.cache//tmp/20-python.hypodisc.codemeta.json 

-- begin log --

Passed 10 files/sources but specified 0 input types! Automatically guessing types...

Detected input types: [('/tmp/codemeta-harvester.cache//tmp/99-version.hypodisc.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/99-repostatus.hypodisc.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/90-authors.hypodisc.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/43-releasenotes.hypodisc.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/41-readme.hypodisc.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/40-gitapi.hypodisc.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/39-gitdate.hypodisc.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/32-contributors.hypodisc.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/29-license.hypodisc.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/20-python.hypodisc.codemeta.json', 'json')]

Adding to contextgraph: /tmp/turtle

Initial URI automatically generated, may be overriden later: https://tools.clariah.nl/hypodisc

Processing source #1 of 10

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-version.hypodisc.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/hypodisc

[CODEMETA COMPOSITION (https://tools.clariah.nl/hypodisc)] processed 1 new triples, total is now 2

Processing source #2 of 10

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-repostatus.hypodisc.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/hypodisc

[CODEMETA COMPOSITION (https://tools.clariah.nl/hypodisc)] processed 1 new triples, total is now 3

Processing source #3 of 10

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/90-authors.hypodisc.codemeta.json

    Found main resource with URI https://tools.clariah.nl/hypodisc.topcontributor/snapshot

    Injected (possibly temporary) URI https://tools.clariah.nl/hypodisc

[CODEMETA COMPOSITION (https://tools.clariah.nl/hypodisc)] processed 8 new triples, total is now 10

Processing source #4 of 10

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/43-releasenotes.hypodisc.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/hypodisc

[CODEMETA COMPOSITION (https://tools.clariah.nl/hypodisc)] processed 2 new triples, total is now 12

Processing source #5 of 10

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/41-readme.hypodisc.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/hypodisc

[CODEMETA COMPOSITION (https://tools.clariah.nl/hypodisc)] processed 1 new triples, total is now 13

Processing source #6 of 10

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/40-gitapi.hypodisc.codemeta.json

    Found main resource with URI https://tools.clariah.nl/hypodisc/snapshot

    Injected (possibly temporary) URI https://tools.clariah.nl/hypodisc

[CODEMETA COMPOSITION (https://tools.clariah.nl/hypodisc)] overriding old http://schema.org/author (https://tools.clariah.nl/stub/H-77dcf9747813ea93 -> https://tools.clariah.nl/stub/H6b6437fec2aa9595)

[CODEMETA COMPOSITION (https://tools.clariah.nl/hypodisc)] processed 19 new triples, total is now 27

Processing source #7 of 10

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/39-gitdate.hypodisc.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/hypodisc

[CODEMETA COMPOSITION (https://tools.clariah.nl/hypodisc)] overriding old http://schema.org/dateCreated (2023-08-14T16:04:41Z -> 2023-07-27T14:09:41Z+0200)

[CODEMETA COMPOSITION (https://tools.clariah.nl/hypodisc)] overriding old http://schema.org/dateModified (2024-11-14T13:23:22Z -> 2024-10-17T17:10:45Z+0200)

[CODEMETA COMPOSITION (https://tools.clariah.nl/hypodisc)] processed 2 new triples, total is now 27

Processing source #8 of 10

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/32-contributors.hypodisc.codemeta.json

    Found main resource with URI https://tools.clariah.nl/hypodisc.contributors/snapshot

    Injected (possibly temporary) URI https://tools.clariah.nl/hypodisc

[CODEMETA COMPOSITION (https://tools.clariah.nl/hypodisc)] processed 8 new triples, total is now 28

Processing source #9 of 10

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/29-license.hypodisc.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/hypodisc

[CODEMETA COMPOSITION (https://tools.clariah.nl/hypodisc)] overriding old http://schema.org/license (http://spdx.org/licenses/GPL-3.0-only -> GPL-3.0-only)

[CODEMETA CORRECTION (https://tools.clariah.nl/hypodisc)] automatically converting license to spdx URI

[CODEMETA COMPOSITION (https://tools.clariah.nl/hypodisc)] processed 1 new triples, total is now 28

Processing source #10 of 10

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/20-python.hypodisc.codemeta.json

    Found main resource with URI https://tools.clariah.nl/hypodisc/0.1.0

    Injected (possibly temporary) URI https://tools.clariah.nl/hypodisc

[CODEMETA COMPOSITION (hypodisc)] overriding old http://schema.org/author (https://tools.clariah.nl/stub/H6b6437fec2aa9595 -> https://tools.clariah.nl/stub/H5e59c83b27661f5b)

[CODEMETA COMPOSITION (hypodisc)] overriding old https://codemeta.github.io/terms/issueTracker (https://github.com/wxwilcke/hypodisc/issues -> https://gitlab.com/wxwilcke/hypodisc/-/issues)

[CODEMETA COMPOSITION (hypodisc)] overriding old http://schema.org/license (http://spdx.org/licenses/GPL-3.0-only -> http://spdx.org/licenses/AGPL-3.0-only)

[CODEMETA COMPOSITION (hypodisc)] overriding old http://schema.org/version (1.0.0 -> 0.1.0)

[CODEMETA COMPOSITION (hypodisc)] processed 58 new triples, total is now 77

Remapping URI to (possibly) new identifier and version component: https://tools.clariah.nl/hypodisc -> https://tools.clariah.nl/hypodisc/0.1.0

[CODEMETA VALIDATION (hypodisc)] done

[CODEMETA ENRICHMENT (hypodisc)] Guessing interface type https://w3id.org/software-types#WebApplication based on clues

[CODEMETA ENRICHMENT (hypodisc)] automatically adding programmingLanguage Python derived from runtimePlatform Python

[CODEMETA ENRICHMENT (hypodisc)] adding affiliation(s) of first author as producer

VALIDATION https://tools.clariah.nl/hypodisc/0.1.0 #1: Info: Software source code *SHOULD* link to a continuous integration service that builds the software and runs the software's tests (This is missing in the metadata)

VALIDATION https://tools.clariah.nl/hypodisc/0.1.0 #2: Info: An interface type *SHOULD* be expressed: Software source code should define one or more target products that are the resulting software applications offering specific interfaces (The metadata does express this currently, but something is wrong in the way it is expressed. Is the type/class valid?)

VALIDATION https://tools.clariah.nl/hypodisc/0.1.0 #3: Warning: Documentation *SHOULD* be expressed (This is missing in the metadata)

VALIDATION https://tools.clariah.nl/hypodisc/0.1.0 #4: Info: Reference publications *SHOULD* be expressed, if any (This is missing in the metadata)

VALIDATION https://tools.clariah.nl/hypodisc/0.1.0 #5: Info: The funder *SHOULD* be acknowledged (This is missing in the metadata)

VALIDATION https://tools.clariah.nl/hypodisc/0.1.0 #6: Info: The technology readiness level *SHOULD* be expressed (This is missing in the metadata)

-- end log --

[harvester info] Output written to /tmp/out/hypodisc.codemeta.json

[harvester info] <-- Finished processing hypodisc (https://github.com/wxwilcke/hypodisc) [Thu Dec 26 03:09:30 UTC 2024]

# review.name
Automatic software metadata validation report for hypodisc 0.1.0

# review.reviewBody
Please consult the CLARIAH Software Metadata Requirements at https://github.com/CLARIAH/clariah-plus/blob/main/requirements/software-metadata-requirements.md for an in-depth explanation of any found problems

Validation of hypodisc 0.1.0 was successful (score=3/5), but there are some warnings which should be addressed:

1. Info: Software source code *SHOULD* link to a continuous integration service that builds the software and runs the software's tests (This is missing in the metadata)
2. Info: An interface type *SHOULD* be expressed: Software source code should define one or more target products that are the resulting software applications offering specific interfaces (The metadata does express this currently, but something is wrong in the way it is expressed. Is the type/class valid?)
3. Warning: Documentation *SHOULD* be expressed (This is missing in the metadata)
4. Info: Reference publications *SHOULD* be expressed, if any (This is missing in the metadata)
5. Info: The funder *SHOULD* be acknowledged (This is missing in the metadata)
6. Info: The technology readiness level *SHOULD* be expressed (This is missing in the metadata)