(log file starts at Sun Sep 15 03:12:00 UTC 2024)

[harvester info] --> Processing nederlab-pipeline (https://github.com/proycon/nederlab-pipeline) [Sun Sep 15 03:12:00 UTC 2024]

[harvester info] Git updating cached clone of https://github.com/proycon/nederlab-pipeline...

[harvester info] Found release v0.9.11

[harvester info] Using 'v0.9.11'

[harvester info] Git reference: v0.9.11

[harvester info] Scanning directory /tmp/codemeta-harvester.cache/nederlab-pipeline for harvestable resources...

[harvester info] found codemeta.json for nederlab-pipeline (md5sum 28152a667f87ab59df85bec82a899a11); **NOTE: this is considered authoritative and most other detection methods will be skipped now!**

[harvester info] Inferring repostatus information from git activity (used only as a fallback if not explicitly provided)...

[harvester info] Inferred repostatus https://www.repostatus.org/#inactive

[harvester info] Looking for repostatus information in README.md in master branch...

[harvester info] Found repostatus (master branch) https://www.repostatus.org/#inactive

[harvester info] Setting group Nederlab

[harvester info] Reconciliating: codemetapy  --baseuri https://tools.clariah.nl --baseuri https://tools.clariah.nl --includecontext --addcontext https://w3id.org/nwo-research-fields --addcontext https://w3id.org/research-technology-readiness-levels --addcontextgraph https://vocabs.dariah.eu/rest/v1/tadirah/data?format=text/turtle --trl --identifier "nederlab-pipeline" --codeRepository "https://github.com/proycon/nederlab-pipeline" --validate /etc/software.ttl --released --enrich --textv "Please consult the CLARIAH Software Metadata Requirements at https://github.com/CLARIAH/clariah-plus/blob/main/requirements/software-metadata-requirements.md for an in-depth explanation of any found problems" -O /tmp/out/nederlab-pipeline.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-repostatus.nederlab-pipeline.codemeta.json /tmp/codemeta-harvester.cache//tmp/10-jsonld.nederlab-pipeline.codemeta.json /tmp/codemeta-harvester.cache//tmp/05-repostatus.nederlab-pipeline.codemeta.json /tmp/codemeta-harvester.cache//tmp/04-applicationSuite.nederlab-pipeline.codemeta.json 

-- begin log --

Passed 4 files/sources but specified 0 input types! Automatically guessing types...

Detected input types: [('/tmp/codemeta-harvester.cache//tmp/99-repostatus.nederlab-pipeline.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/10-jsonld.nederlab-pipeline.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/05-repostatus.nederlab-pipeline.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/04-applicationSuite.nederlab-pipeline.codemeta.json', 'json')]

Adding to contextgraph: /tmp/turtle

Initial URI automatically generated, may be overriden later: https://tools.clariah.nl/nederlab-pipeline

Processing source #1 of 4

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-repostatus.nederlab-pipeline.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/nederlab-pipeline

[CODEMETA COMPOSITION (https://tools.clariah.nl/nederlab-pipeline)] processed 1 new triples, total is now 2

Processing source #2 of 4

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/10-jsonld.nederlab-pipeline.codemeta.json

    Injected (possibly temporary) URI https://tools.clariah.nl/nederlab-pipeline

[CODEMETA COMPOSITION (nederlab-pipeline)] overriding old https://codemeta.github.io/terms/developmentStatus (https://www.repostatus.org/#inactive -> active)

[CODEMETA CORRECTION (nederlab-pipeline)] automatically converting status active to repostatus URI

[CODEMETA CORRECTION (nederlab-pipeline)] automatically converting spdx license URI from https:// to http:///

[CODEMETA COMPOSITION (nederlab-pipeline)] processed 71 new triples, total is now 71

Processing source #3 of 4

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/05-repostatus.nederlab-pipeline.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/nederlab-pipeline

[CODEMETA COMPOSITION (nederlab-pipeline)] overriding old https://codemeta.github.io/terms/developmentStatus (https://www.repostatus.org/#active -> https://www.repostatus.org/#inactive)

[CODEMETA COMPOSITION (nederlab-pipeline)] processed 1 new triples, total is now 71

Processing source #4 of 4

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/04-applicationSuite.nederlab-pipeline.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/nederlab-pipeline

[CODEMETA COMPOSITION (nederlab-pipeline)] processed 1 new triples, total is now 72

Remapping URI to (possibly) new identifier and version component: https://tools.clariah.nl/nederlab-pipeline -> https://tools.clariah.nl/nederlab-pipeline/0.8.0

[CODEMETA VALIDATION (nederlab-pipeline)] done

[CODEMETA ENRICHMENT (nederlab-pipeline)] adding author https://orcid.org/0000-0002-1046-0006 as contributor

[CODEMETA ENRICHMENT (nederlab-pipeline)] considering first author as maintainer

VALIDATION https://tools.clariah.nl/nederlab-pipeline/0.8.0 #1: Info: An interface type *SHOULD* be expressed: Software source code should define one or more target products that are the resulting software applications offering specific interfaces (This is missing in the metadata)

VALIDATION https://tools.clariah.nl/nederlab-pipeline/0.8.0 #2: Warning: Documentation *SHOULD* be expressed (This is missing in the metadata)

VALIDATION https://tools.clariah.nl/nederlab-pipeline/0.8.0 #3: Info: Reference publications *SHOULD* be expressed, if any (This is missing in the metadata)

VALIDATION https://tools.clariah.nl/nederlab-pipeline/0.8.0 #4: Info: The technology readiness level *SHOULD* be expressed (This is missing in the metadata)

-- end log --

[harvester info] Output written to /tmp/out/nederlab-pipeline.codemeta.json

[harvester info] <-- Finished processing nederlab-pipeline (https://github.com/proycon/nederlab-pipeline) [Sun Sep 15 03:12:01 UTC 2024]