(log file starts at Sat Oct 12 03:15:24 UTC 2024)

[harvester info] --> Processing pure3d (https://github.com/CLARIAH/pure3d) [Sat Oct 12 03:15:24 UTC 2024]

[harvester info] Git updating cached clone of https://github.com/CLARIAH/pure3d...

[harvester info] No releases found, falling back to default git branch!

[harvester info] Using 'main'

[harvester info] Git reference: main

[harvester info] Scanning directory /tmp/codemeta-harvester.cache/pure3d for harvestable resources...

[harvester info] found python setup for pure3d, converting to codemeta

[harvester info] Looking for license....

[harvester info] Found license MIT

[harvester info] Getting contributors from git...

[harvester info] Getting top contributor from git...

[harvester info] Git top contributor Vic Ding <qiqing.ding@di.huc.knaw.nl> will be assigned as author (and maintainer) if none are found in the metadata

[harvester info] Extracting last and first commit date from git log....

[harvester info] Date created: 2022-04-19T12:58:54Z+0200, date modified: 2024-04-11T21:53:43Z+0200

[harvester info] Querying Github/GitLab API (https://github.com/CLARIAH/pure3d)

[harvester info] Adding URL for found README: README.md

[harvester info] Looking for TRL information in README.md...

[harvester info] Looking for repostatus information in README.md...

[harvester info] Found repostatus https://www.repostatus.org/#wip

[harvester info] Looking for continuous integration information in README.md...

[harvester info] Looking for documentation links in README.md...

[harvester info] Inferring repostatus information from git activity (used only as a fallback if not explicitly provided)...

[harvester info] Inferred repostatus https://www.repostatus.org/#active

[harvester info] Reconciliating: codemetapy  --baseuri https://tools.clariah.nl --baseuri https://tools.clariah.nl --includecontext --addcontext https://w3id.org/nwo-research-fields --addcontext https://w3id.org/research-technology-readiness-levels --addcontextgraph https://vocabs.dariah.eu/rest/v1/tadirah/data?format=text/turtle --trl --identifier "pure3d" --codeRepository "https://github.com/CLARIAH/pure3d" --validate /etc/software.ttl --enrich --textv "Please consult the CLARIAH Software Metadata Requirements at https://github.com/CLARIAH/clariah-plus/blob/main/requirements/software-metadata-requirements.md for an in-depth explanation of any found problems" -O /tmp/out/pure3d.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-repostatus.pure3d.codemeta.json /tmp/codemeta-harvester.cache//tmp/90-authors.pure3d.codemeta.json /tmp/codemeta-harvester.cache//tmp/41-readme.pure3d.codemeta.json /tmp/codemeta-harvester.cache//tmp/40-gitapi.pure3d.codemeta.json /tmp/codemeta-harvester.cache//tmp/39-gitdate.pure3d.codemeta.json /tmp/codemeta-harvester.cache//tmp/32-contributors.pure3d.codemeta.json /tmp/codemeta-harvester.cache//tmp/29-license.pure3d.codemeta.json /tmp/codemeta-harvester.cache//tmp/20-python.pure3d.codemeta.json /tmp/codemeta-harvester.cache//tmp/11-repostatus.pure3d.codemeta.json 

-- begin log --

Passed 9 files/sources but specified 0 input types! Automatically guessing types...

Detected input types: [('/tmp/codemeta-harvester.cache//tmp/99-repostatus.pure3d.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/90-authors.pure3d.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/41-readme.pure3d.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/40-gitapi.pure3d.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/39-gitdate.pure3d.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/32-contributors.pure3d.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/29-license.pure3d.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/20-python.pure3d.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/11-repostatus.pure3d.codemeta.json', 'json')]

Adding to contextgraph: /tmp/turtle

Initial URI automatically generated, may be overriden later: https://tools.clariah.nl/pure3d

Processing source #1 of 9

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-repostatus.pure3d.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/pure3d

[CODEMETA COMPOSITION (https://tools.clariah.nl/pure3d)] processed 1 new triples, total is now 2

Processing source #2 of 9

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/90-authors.pure3d.codemeta.json

    Found main resource with URI https://tools.clariah.nl/pure3d.topcontributor/snapshot

    Injected (possibly temporary) URI https://tools.clariah.nl/pure3d

[CODEMETA COMPOSITION (https://tools.clariah.nl/pure3d)] processed 8 new triples, total is now 9

Processing source #3 of 9

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/41-readme.pure3d.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/pure3d

[CODEMETA COMPOSITION (https://tools.clariah.nl/pure3d)] processed 1 new triples, total is now 10

Processing source #4 of 9

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/40-gitapi.pure3d.codemeta.json

    Found main resource with URI https://tools.clariah.nl/pure3d/snapshot

    Injected (possibly temporary) URI https://tools.clariah.nl/pure3d

[CODEMETA COMPOSITION (https://tools.clariah.nl/pure3d)] processed 13 new triples, total is now 22

Processing source #5 of 9

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/39-gitdate.pure3d.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/pure3d

[CODEMETA COMPOSITION (https://tools.clariah.nl/pure3d)] overriding old http://schema.org/dateCreated (2022-04-19T10:58:53Z -> 2022-04-19T12:58:54Z+0200)

[CODEMETA COMPOSITION (https://tools.clariah.nl/pure3d)] overriding old http://schema.org/dateModified (2024-04-11T19:54:17Z -> 2024-04-11T21:53:43Z+0200)

[CODEMETA COMPOSITION (https://tools.clariah.nl/pure3d)] processed 2 new triples, total is now 22

Processing source #6 of 9

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/32-contributors.pure3d.codemeta.json

    Found main resource with URI https://tools.clariah.nl/pure3d.contributors/snapshot

    Injected (possibly temporary) URI https://tools.clariah.nl/pure3d

[CODEMETA COMPOSITION (https://tools.clariah.nl/pure3d)] processed 8 new triples, total is now 23

Processing source #7 of 9

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/29-license.pure3d.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/pure3d

[CODEMETA COMPOSITION (https://tools.clariah.nl/pure3d)] overriding old http://schema.org/license (http://spdx.org/licenses/MIT -> MIT)

[CODEMETA CORRECTION (https://tools.clariah.nl/pure3d)] automatically converting license to spdx URI

[CODEMETA COMPOSITION (https://tools.clariah.nl/pure3d)] processed 1 new triples, total is now 23

Processing source #8 of 9

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/20-python.pure3d.codemeta.json

    Found main resource with URI https://tools.clariah.nl/pure3dtools/0.0.4

    Injected (possibly temporary) URI https://tools.clariah.nl/pure3d

[CODEMETA COMPOSITION (pure3dtools)] overriding old http://schema.org/codeRepository (https://github.com/CLARIAH/pure3d -> https://github.com/CLARIAH/pure3d/tree/master/src/pure3dtools)

[CODEMETA COMPOSITION (pure3dtools)] overriding old http://schema.org/description (pure3d project University Maastricht -> Pure3D tools)

[CODEMETA COMPOSITION (pure3dtools)] overriding old https://codemeta.github.io/terms/developmentStatus (https://www.repostatus.org/#active -> https://www.repostatus.org/#wip)

[CODEMETA COMPOSITION (pure3dtools)] overriding old http://schema.org/name (pure3d -> pure3dtools)

[CODEMETA COMPOSITION (pure3dtools)] processed 63 new triples, total is now 80

Processing source #9 of 9

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/11-repostatus.pure3d.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/pure3d

[CODEMETA COMPOSITION (pure3dtools)] processed 1 new triples, total is now 80

Remapping URI to (possibly) new identifier and version component: https://tools.clariah.nl/pure3d -> https://tools.clariah.nl/pure3d/0.0.4

[CODEMETA VALIDATION (pure3d)] done

[CODEMETA ENRICHMENT (pure3d)] Guessing interface type https://w3id.org/software-types#WebApplication based on clues

[CODEMETA ENRICHMENT (pure3d)] automatically adding programmingLanguage Python derived from runtimePlatform Python

[CODEMETA ENRICHMENT (pure3d)] automatically adding programmingLanguage Python derived from runtimePlatform Python

[CODEMETA ENRICHMENT (pure3d)] automatically adding programmingLanguage Python derived from runtimePlatform Python

[CODEMETA ENRICHMENT (pure3d)] automatically adding programmingLanguage Python derived from runtimePlatform Python

[CODEMETA ENRICHMENT (pure3d)] automatically adding programmingLanguage Python derived from runtimePlatform Python

[CODEMETA ENRICHMENT (pure3d)] automatically adding programmingLanguage Python derived from runtimePlatform Python

[CODEMETA ENRICHMENT (pure3d)] automatically adding programmingLanguage Python derived from runtimePlatform Python

[CODEMETA ENRICHMENT (pure3d)] automatically adding programmingLanguage Python derived from runtimePlatform Python

[CODEMETA ENRICHMENT (pure3d)] considering first author as maintainer

VALIDATION https://tools.clariah.nl/pure3d/0.0.4 #1: Info: Software source code *SHOULD* link to a continuous integration service that builds the software and runs the software's tests (This is missing in the metadata)

VALIDATION https://tools.clariah.nl/pure3d/0.0.4 #2: Info: An interface type *SHOULD* be expressed: Software source code should define one or more target products that are the resulting software applications offering specific interfaces (The metadata does express this currently, but something is wrong in the way it is expressed. Is the type/class valid?)

VALIDATION https://tools.clariah.nl/pure3d/0.0.4 #3: Warning: Documentation *SHOULD* be expressed (The metadata does express this currently, but something is wrong in the way it is expressed. Is the type/class valid?)

VALIDATION https://tools.clariah.nl/pure3d/0.0.4 #4: Info: Reference publications *SHOULD* be expressed, if any (This is missing in the metadata)

VALIDATION https://tools.clariah.nl/pure3d/0.0.4 #5: Info: The funder *SHOULD* be acknowledged (This is missing in the metadata)

-- end log --

[harvester info] Output written to /tmp/out/pure3d.codemeta.json

[harvester info] <-- Finished processing pure3d (https://github.com/CLARIAH/pure3d) [Sat Oct 12 03:15:40 UTC 2024]