# applicationCategory[].skos:note.@value
annotating  refers to the activity of making information about a digital object explicit by adding notes, metadata, keywords, tags or links to a digitized representation or to an annotation file associated with it. This can be in the form of explanatory annotations that comments or contextualize a passage, annotations that make structural or linguistic information explicit, as linked open data making the relationships between objects machine-readable, or in the case of general metadata, adding information about the object as a whole.

# author[].affiliation[].name
KNAW Humanities Cluster & CLST, Radboud University

# contributor[].affiliation[].name
KNAW Humanities Cluster & CLST, Radboud University

# description
STAM is a library for dealing with standoff annotations on text, this is the python binding.

# developmentStatus[].skos:definition
The project has reached a stable, usable state and is being actively developed.

# developmentStatus[].skos:definition
Technology ready enough and in initial use by end-users in intended scholarly environments. Further validation may be in progress.

# https://github.com/proycon/codemetapy/log
(log file starts at Thu Dec 26 03:14:53 UTC 2024)

[harvester info] --> Processing stam-python (https://github.com/annotation/stam-python) [Thu Dec 26 03:14:53 UTC 2024]

[harvester info] Git updating cached clone of https://github.com/annotation/stam-python...

[harvester info] Found release v0.10.1

[harvester info] Using 'v0.10.1'

[harvester info] Git reference: v0.10.1

[harvester info] Scanning directory /tmp/codemeta-harvester.cache/stam-python for harvestable resources...

[harvester info] found codemeta-harvest.json for stam-python (md5sum 47f7539dabba7c4fffebf125100d8e7a); values in here take precendence over (override) those in later detection stages

[harvester info] found python setup for stam-python, converting to codemeta

[harvester info] found Cargo.toml (rust) for stam-python, converting to codemeta

[harvester info] Looking for license....

[harvester info] Found license GPL-3.0-only

[harvester info] Getting contributors from git...

[harvester info] No git contributors found

[harvester info] Getting top contributor from git...

[harvester info] Git top contributor  will be assigned as author (and maintainer) if none are found in the metadata

[harvester info] Extracting last and first commit date from git log....

[harvester info] Date created: 2023-01-31T14:47:01Z+0100, date modified: 2024-10-18T11:22:13Z+0200

[harvester info] Querying Github/GitLab API (https://github.com/annotation/stam-python)

[harvester info] Adding URL for found README: README.md

[harvester info] Found releaseNotes

[harvester info] Querying Zenodo API for DOI (access token provided)...

[harvester info] Found DOI https://doi.org/10.5281/zenodo.13950634

[harvester info] Looking for TRL information in README.md...

[harvester info] Found TRL https://w3id.org/research-technology-readiness-levels#Level7ReleaseCandidate

[harvester info] Looking for repostatus information in README.md...

[harvester info] Found repostatus https://www.repostatus.org/#active

[harvester info] Looking for continuous integration information in README.md...

[harvester info] Looking for documentation links in README.md...

[harvester info] Scraping title from https://stam-python.readthedocs.io

[harvester info] Found documentation at https://stam-python.readthedocs.io : "name": "STAM Library for Python - API Documentation — stam-python version = '0.9.1' documentation",

[harvester info] Falling back to git tag (v0.10.1) if no version number is specified...

[harvester info] Inferring repostatus information from git activity (used only as a fallback if not explicitly provided)...

[harvester info] Inferred repostatus https://www.repostatus.org/#active

[harvester info] Looking for repostatus information in README.md in master branch...

[harvester info] Found repostatus (master branch) https://www.repostatus.org/#active

[harvester info] Setting group STAM

[harvester info] Reconciliating: codemetapy  --baseuri https://tools.clariah.nl --baseuri https://tools.clariah.nl --includecontext --addcontext https://w3id.org/nwo-research-fields --addcontext https://w3id.org/research-technology-readiness-levels --addcontextgraph https://vocabs.dariah.eu/rest/v1/tadirah/data?format=text/turtle --trl --identifier "stam-python" --codeRepository "https://github.com/annotation/stam-python" --validate /etc/software.ttl --released --enrich --textv "Please consult the CLARIAH Software Metadata Requirements at https://github.com/CLARIAH/clariah-plus/blob/main/requirements/software-metadata-requirements.md for an in-depth explanation of any found problems" -O /tmp/out/stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-version.stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-repostatus.stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/90-authors.stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/50-documentation.stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/43-releasenotes.stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/41-readme.stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/40-gitapi.stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/39-gitdate.stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/29-license.stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/23-rust.stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/20-python.stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/11-trl.stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/11-repostatus.stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/10-harvest.stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/05-repostatus.stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/05-doi.stam-python.codemeta.json /tmp/codemeta-harvester.cache//tmp/04-applicationSuite.stam-python.codemeta.json 

-- begin log --

Passed 17 files/sources but specified 0 input types! Automatically guessing types...

Detected input types: [('/tmp/codemeta-harvester.cache//tmp/99-version.stam-python.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/99-repostatus.stam-python.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/90-authors.stam-python.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/50-documentation.stam-python.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/43-releasenotes.stam-python.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/41-readme.stam-python.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/40-gitapi.stam-python.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/39-gitdate.stam-python.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/29-license.stam-python.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/23-rust.stam-python.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/20-python.stam-python.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/11-trl.stam-python.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/11-repostatus.stam-python.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/10-harvest.stam-python.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/05-repostatus.stam-python.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/05-doi.stam-python.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/04-applicationSuite.stam-python.codemeta.json', 'json')]

Adding to contextgraph: /tmp/turtle

Initial URI automatically generated, may be overriden later: https://tools.clariah.nl/stam-python

Processing source #1 of 17

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-version.stam-python.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/stam-python

[CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] processed 1 new triples, total is now 2

Processing source #2 of 17

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-repostatus.stam-python.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/stam-python

[CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] processed 1 new triples, total is now 3

Processing source #3 of 17

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/90-authors.stam-python.codemeta.json

    Found main resource with URI https://tools.clariah.nl/stam-python.topcontributor/snapshot

    Injected (possibly temporary) URI https://tools.clariah.nl/stam-python

[CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] processed 1 new triples, total is now 3

Processing source #4 of 17

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/50-documentation.stam-python.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/stam-python

[CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] processed 4 new triples, total is now 7

Processing source #5 of 17

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/43-releasenotes.stam-python.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/stam-python

[CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] processed 2 new triples, total is now 9

Processing source #6 of 17

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/41-readme.stam-python.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/stam-python

[CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] processed 1 new triples, total is now 10

Processing source #7 of 17

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/40-gitapi.stam-python.codemeta.json

    Found main resource with URI https://tools.clariah.nl/stam-python/snapshot

    Injected (possibly temporary) URI https://tools.clariah.nl/stam-python

[CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] processed 19 new triples, total is now 28

Processing source #8 of 17

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/39-gitdate.stam-python.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/stam-python

[CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] overriding old http://schema.org/dateCreated (2023-02-07T13:18:02Z -> 2023-01-31T14:47:01Z+0100)

[CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] overriding old http://schema.org/dateModified (2024-11-28T12:28:06Z -> 2024-10-18T11:22:13Z+0200)

[CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] processed 2 new triples, total is now 28

Processing source #9 of 17

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/29-license.stam-python.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/stam-python

[CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] overriding old http://schema.org/license (http://spdx.org/licenses/GPL-3.0-only -> GPL-3.0-only)

[CODEMETA CORRECTION (https://tools.clariah.nl/stam-python)] automatically converting license to spdx URI

[CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] processed 1 new triples, total is now 28

Processing source #10 of 17

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/23-rust.stam-python.codemeta.json

    Found main resource with URI https://tools.clariah.nl/cargo.toml/0.10.1

    Injected (possibly temporary) URI https://tools.clariah.nl/stam-python

[CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] overriding old http://schema.org/description (Python binding to work with STAM, the Standoff Text Annotation Model, from Python. Written in Rust. -> STAM is a library for dealing with standoff annotations on text, this is the python binding.)

[CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] overriding old http://schema.org/keywords (library -> annotation)

[CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] overriding old http://schema.org/keywords (python -> annotation)

[CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] overriding old https://codemeta.github.io/terms/readme (https://github.com/annotation/stam-python/blob/v0.10.1//README.md -> https://tools.clariah.nl/README.md)

[CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] overriding old http://schema.org/softwareHelp (https://stam-python.readthedocs.io -> https://stam-python.readthedocs.io/)

[CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] overriding old http://schema.org/version (v0.10.1 -> 0.10.1)

[CODEMETA COMPOSITION (https://tools.clariah.nl/stam-python)] processed 43 new triples, total is now 57

Processing source #11 of 17

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/20-python.stam-python.codemeta.json

    Found main resource with URI https://tools.clariah.nl/stam/snapshot

    Injected (possibly temporary) URI https://tools.clariah.nl/stam-python

[CODEMETA COMPOSITION (stam)] overriding old http://schema.org/name (stam-python -> stam)

[CODEMETA COMPOSITION (stam)] processed 4 new triples, total is now 59

Processing source #12 of 17

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/11-trl.stam-python.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/stam-python

[CODEMETA COMPOSITION (stam)] processed 1 new triples, total is now 60

Processing source #13 of 17

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/11-repostatus.stam-python.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/stam-python

[CODEMETA COMPOSITION (stam)] processed 1 new triples, total is now 60

Processing source #14 of 17

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/10-harvest.stam-python.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/stam-python

[CODEMETA COMPOSITION (stam)] overriding old http://schema.org/producer (https://tools.clariah.nl/org/annotation -> https://tools.clariah.nl/stub/H09e2f68c93af9079)

[CODEMETA COMPOSITION (stam)] processed 15 new triples, total is now 74

Processing source #15 of 17

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/05-repostatus.stam-python.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/stam-python

[CODEMETA COMPOSITION (stam)] processed 1 new triples, total is now 74

Processing source #16 of 17

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/05-doi.stam-python.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/stam-python

[CODEMETA COMPOSITION (stam)] overriding old http://schema.org/identifier (stam -> )

[CODEMETA COMPOSITION (stam)] processed 5 new triples, total is now 78

Processing source #17 of 17

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/04-applicationSuite.stam-python.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/stam-python

[CODEMETA COMPOSITION (https://tools.clariah.nl/stub/H1bb13985637c446a)] processed 1 new triples, total is now 79

Remapping URI to (possibly) new identifier and version component: https://tools.clariah.nl/stam-python -> https://tools.clariah.nl/stam-python/0.10.1

[CODEMETA VALIDATION (stam-python)] done

[CODEMETA ENRICHMENT (stam-python)] Guessing interface type https://w3id.org/software-types#SoftwareLibrary based on clues

[CODEMETA ENRICHMENT (stam-python)] adding author https://tools.clariah.nl/person/maarten-van-gompel as contributor

[CODEMETA ENRICHMENT (stam-python)] considering first author as maintainer

VALIDATION https://tools.clariah.nl/stam-python/0.10.1 #1: Info: Software source code *SHOULD* link to a continuous integration service that builds the software and runs the software's tests (This is missing in the metadata)

VALIDATION https://tools.clariah.nl/stam-python/0.10.1 #2: Warning: Documentation *SHOULD* be expressed (The metadata does express this currently, but something is wrong in the way it is expressed. Is the type/class valid?)

VALIDATION https://tools.clariah.nl/stam-python/0.10.1 #3: Info: Reference publications *SHOULD* be expressed, if any (This is missing in the metadata)

-- end log --

[harvester info] Output written to /tmp/out/stam-python.codemeta.json

[harvester info] <-- Finished processing stam-python (https://github.com/annotation/stam-python) [Thu Dec 26 03:15:09 UTC 2024]

# maintainer.affiliation[].name
KNAW Humanities Cluster & CLST, Radboud University

# review.name
Automatic software metadata validation report for stam 0.10.1

# review.reviewBody
Please consult the CLARIAH Software Metadata Requirements at https://github.com/CLARIAH/clariah-plus/blob/main/requirements/software-metadata-requirements.md for an in-depth explanation of any found problems

Validation of stam 0.10.1 was successful (score=3/5), but there are some warnings which should be addressed:

1. Info: Software source code *SHOULD* link to a continuous integration service that builds the software and runs the software's tests (This is missing in the metadata)
2. Warning: Documentation *SHOULD* be expressed (The metadata does express this currently, but something is wrong in the way it is expressed. Is the type/class valid?)
3. Info: Reference publications *SHOULD* be expressed, if any (This is missing in the metadata)