Timbuctoo

An RDF datastore that gives researchers control over the sharing of data between datasets

Citation

You can cite this software using the following citation generated from its metadata:

  • Haentjens Dekker, Ronald
  • Joshi, Pratham
  • Kroese, Meindert
  • Maas, Martijn
  • Meijer, Kerim
  • Noordzij, Jauco
  • Ravenek, Walter
  • van den Berg, Henk
  • van der Ark, René
(2024) Timbuctoo 7.15 .
  • Huygens ING
.

Logs & Reviews

Name
Automatic software metadata validation report for Timbuctoo 7.15
Author
  • codemetapy validator using software.ttl
Date
2024-04-21 03:26:15
Review
Please consult the CLARIAH Software Metadata Requirements at https://github.com/CLARIAH/clariah-plus/blob/main/requirements/software-metadata-requirements.md for an in-depth explanation of any found problems

Validation of Timbuctoo 7.15 was successful (score=4/5), but there are some remarks which you may or may not want to address:

1. Info: Software source code *SHOULD* link to a continuous integration service that builds the software and runs the software's tests (This is missing in the metadata)
2. Info: An interface type *SHOULD* be expressed: Software source code should define one or more target products that are the resulting software applications offering specific interfaces (This is missing in the metadata)
3. Info: Reference publications *SHOULD* be expressed, if any (This is missing in the metadata)
4. Info: The funder *SHOULD* be acknowledged (This is missing in the metadata)
5. Info: The technology readiness level *SHOULD* be expressed (This is missing in the metadata)
Rating
★ ★ ★ ★ ☆
(log file starts at Mon Apr 22 03:26:10 UTC 2024)

[harvester info] --> Processing timbuctoo (https://github.com/HuygensING/timbuctoo) [Mon Apr 22 03:26:10 UTC 2024]

[harvester info] Git updating cached clone of https://github.com/HuygensING/timbuctoo...

[harvester info] Found release v7.15

[harvester info] Using 'v7.15'

[harvester info] Git reference: v7.15

[harvester info] Scanning directory /tmp/codemeta-harvester.cache/timbuctoo for harvestable resources...

[harvester info] found pom.xml (Java/Maven) for timbuctoo, converting to codemeta

[harvester info] Looking for license....

[harvester info] Found license GPL-3.0-only

[harvester info] Getting contributors from git...

[harvester info] Getting top contributor from git...

[harvester info] Git top contributor Martijn Maas <martijn.maas@huygens.knaw.nl> will be assigned as author (and maintainer) if none are found in the metadata

[harvester info] Extracting last and first commit date from git log....

[harvester info] Date created: 2012-08-15T14:23:19Z+0000, date modified: 2024-03-01T10:25:59Z+0100

[harvester info] Querying Github/GitLab API (https://github.com/HuygensING/timbuctoo)

[harvester info] Adding URL for found README: README.adoc

[harvester info] Found releaseNotes

[harvester info] Querying Zenodo API for DOI (access token provided)...

[harvester info] Looking for TRL information in README.adoc...

[harvester info] Looking for repostatus information in README.adoc...

[harvester info] Looking for continuous integration information in README.adoc...

[harvester info] Looking for documentation links in README.adoc...

[harvester info] Scraping title from https://github.com/HuygensING/timbuctoo/blob/master/documentation/timbuctoo-graphql-api-guide.adoc[this

[harvester info] Found documentation at https://github.com/HuygensING/timbuctoo/blob/master/documentation/timbuctoo-graphql-api-guide.adoc[this : 

[harvester info] Falling back to git tag (v7.15) if no version number is specified...

[harvester info] Inferring repostatus information from git activity (used only as a fallback if not explicitly provided)...

[harvester info] Inferred repostatus https://www.repostatus.org/#active

[harvester info] Looking for repostatus information in README.adoc in master branch...

[harvester info] Reconciliating: codemetapy  --baseuri https://tools.clariah.nl --baseuri https://tools.clariah.nl --includecontext --addcontext https://w3id.org/nwo-research-fields --addcontext https://w3id.org/research-technology-readiness-levels --addcontextgraph https://vocabs.dariah.eu/rest/v1/tadirah/data?format=text/turtle --trl --identifier "timbuctoo" --codeRepository "https://github.com/HuygensING/timbuctoo" --validate /etc/software.ttl --released --enrich --textv "Please consult the CLARIAH Software Metadata Requirements at https://github.com/CLARIAH/clariah-plus/blob/main/requirements/software-metadata-requirements.md for an in-depth explanation of any found problems" -O /tmp/out/timbuctoo.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-version.timbuctoo.codemeta.json /tmp/codemeta-harvester.cache//tmp/99-repostatus.timbuctoo.codemeta.json /tmp/codemeta-harvester.cache//tmp/90-authors.timbuctoo.codemeta.json /tmp/codemeta-harvester.cache//tmp/50-documentation.timbuctoo.codemeta.json /tmp/codemeta-harvester.cache//tmp/43-releasenotes.timbuctoo.codemeta.json /tmp/codemeta-harvester.cache//tmp/41-readme.timbuctoo.codemeta.json /tmp/codemeta-harvester.cache//tmp/40-gitapi.timbuctoo.codemeta.json /tmp/codemeta-harvester.cache//tmp/39-gitdate.timbuctoo.codemeta.json /tmp/codemeta-harvester.cache//tmp/32-contributors.timbuctoo.codemeta.json /tmp/codemeta-harvester.cache//tmp/29-license.timbuctoo.codemeta.json /tmp/codemeta-harvester.cache//tmp/21-java.timbuctoo.codemeta.json 

-- begin log --

Passed 11 files/sources but specified 0 input types! Automatically guessing types...

Detected input types: [('/tmp/codemeta-harvester.cache//tmp/99-version.timbuctoo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/99-repostatus.timbuctoo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/90-authors.timbuctoo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/50-documentation.timbuctoo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/43-releasenotes.timbuctoo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/41-readme.timbuctoo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/40-gitapi.timbuctoo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/39-gitdate.timbuctoo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/32-contributors.timbuctoo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/29-license.timbuctoo.codemeta.json', 'json'), ('/tmp/codemeta-harvester.cache//tmp/21-java.timbuctoo.codemeta.json', 'json')]

Adding to contextgraph: /tmp/turtle

Initial URI automatically generated, may be overriden later: https://tools.clariah.nl/timbuctoo

Processing source #1 of 11

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-version.timbuctoo.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/timbuctoo

[CODEMETA COMPOSITION (https://tools.clariah.nl/timbuctoo)] processed 1 new triples, total is now 2

Processing source #2 of 11

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/99-repostatus.timbuctoo.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/timbuctoo

[CODEMETA COMPOSITION (https://tools.clariah.nl/timbuctoo)] processed 1 new triples, total is now 3

Processing source #3 of 11

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/90-authors.timbuctoo.codemeta.json

    Found main resource with URI https://tools.clariah.nl/timbuctoo.topcontributor/snapshot

    Injected (possibly temporary) URI https://tools.clariah.nl/timbuctoo

[CODEMETA COMPOSITION (https://tools.clariah.nl/timbuctoo)] processed 8 new triples, total is now 10

Processing source #4 of 11

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/50-documentation.timbuctoo.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/timbuctoo

[CODEMETA COMPOSITION (https://tools.clariah.nl/timbuctoo)] processed 3 new triples, total is now 13

Processing source #5 of 11

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/43-releasenotes.timbuctoo.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/timbuctoo

[CODEMETA COMPOSITION (https://tools.clariah.nl/timbuctoo)] processed 2 new triples, total is now 15

Processing source #6 of 11

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/41-readme.timbuctoo.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/timbuctoo

[CODEMETA COMPOSITION (https://tools.clariah.nl/timbuctoo)] processed 1 new triples, total is now 16

Processing source #7 of 11

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/40-gitapi.timbuctoo.codemeta.json

    Found main resource with URI https://tools.clariah.nl/timbuctoo/snapshot

    Injected (possibly temporary) URI https://tools.clariah.nl/timbuctoo

[CODEMETA COMPOSITION (https://tools.clariah.nl/timbuctoo)] processed 19 new triples, total is now 34

Processing source #8 of 11

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/39-gitdate.timbuctoo.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/timbuctoo

[CODEMETA COMPOSITION (https://tools.clariah.nl/timbuctoo)] overriding old http://schema.org/dateCreated (2013-12-18T13:37:39Z -> 2012-08-15T14:23:19Z+0000)

[CODEMETA COMPOSITION (https://tools.clariah.nl/timbuctoo)] overriding old http://schema.org/dateModified (2024-04-05T12:22:15Z -> 2024-03-01T10:25:59Z+0100)

[CODEMETA COMPOSITION (https://tools.clariah.nl/timbuctoo)] processed 2 new triples, total is now 34

Processing source #9 of 11

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/32-contributors.timbuctoo.codemeta.json

    Found main resource with URI https://tools.clariah.nl/timbuctoo.contributors/snapshot

    Injected (possibly temporary) URI https://tools.clariah.nl/timbuctoo

[CODEMETA COMPOSITION (https://tools.clariah.nl/timbuctoo)] processed 134 new triples, total is now 163

Processing source #10 of 11

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/29-license.timbuctoo.codemeta.json

    NOTE: Not a valid JSON-LD document, @context missing! Attempting to inject automatically...

    Injected (possibly temporary) URI https://tools.clariah.nl/timbuctoo

[CODEMETA COMPOSITION (https://tools.clariah.nl/timbuctoo)] overriding old http://schema.org/license (http://spdx.org/licenses/GPL-3.0-only -> GPL-3.0-only)

[CODEMETA CORRECTION (https://tools.clariah.nl/timbuctoo)] automatically converting license to spdx URI

[CODEMETA COMPOSITION (https://tools.clariah.nl/timbuctoo)] processed 1 new triples, total is now 163

Processing source #11 of 11

Parsing json-ld file from /tmp/codemeta-harvester.cache//tmp/21-java.timbuctoo.codemeta.json

    Found main resource with URI https://tools.clariah.nl/nl.knaw.huygens.timbuctoo/7.15

    Injected (possibly temporary) URI https://tools.clariah.nl/timbuctoo

[CODEMETA COMPOSITION (nl.knaw.huygens.timbuctoo)] overriding old http://schema.org/author (https://tools.clariah.nl/stub/H-528915f6cc5f9c12 -> https://tools.clariah.nl/stub/H-11c4f1afef3414d4)

[CODEMETA COMPOSITION (nl.knaw.huygens.timbuctoo)] overriding old http://schema.org/description (an RDF datastore that gives researchers control over the sharing of data between datasets -> 

    An RDF datastore that gives researchers control over the sharing of data between datasets

  )

[CODEMETA COMPOSITION (nl.knaw.huygens.timbuctoo)] overriding old http://schema.org/license (http://spdx.org/licenses/GPL-3.0-only -> http://www.gnu.org/licenses/gpl.txt)

[CODEMETA COMPOSITION (nl.knaw.huygens.timbuctoo)] overriding old http://schema.org/name (timbuctoo -> Timbuctoo)

[CODEMETA COMPOSITION (nl.knaw.huygens.timbuctoo)] overriding old http://schema.org/producer (https://tools.clariah.nl/org/huygens-instituut-knaw -> https://tools.clariah.nl/org/huygens-ing)

[CODEMETA COMPOSITION (nl.knaw.huygens.timbuctoo)] overriding old http://schema.org/version (v7.15 -> 7.15)

[CODEMETA COMPOSITION (nl.knaw.huygens.timbuctoo)] processed 233 new triples, total is now 389

Remapping URI to (possibly) new identifier and version component: https://tools.clariah.nl/timbuctoo -> https://tools.clariah.nl/timbuctoo/7.15

[CODEMETA VALIDATION (timbuctoo)] done

[CODEMETA ENRICHMENT (timbuctoo)] considering first author as maintainer

VALIDATION https://tools.clariah.nl/timbuctoo/7.15 #1: Info: Software source code *SHOULD* link to a continuous integration service that builds the software and runs the software's tests (This is missing in the metadata)

VALIDATION https://tools.clariah.nl/timbuctoo/7.15 #2: Info: An interface type *SHOULD* be expressed: Software source code should define one or more target products that are the resulting software applications offering specific interfaces (This is missing in the metadata)

VALIDATION https://tools.clariah.nl/timbuctoo/7.15 #3: Info: Reference publications *SHOULD* be expressed, if any (This is missing in the metadata)

VALIDATION https://tools.clariah.nl/timbuctoo/7.15 #4: Info: The funder *SHOULD* be acknowledged (This is missing in the metadata)

VALIDATION https://tools.clariah.nl/timbuctoo/7.15 #5: Info: The technology readiness level *SHOULD* be expressed (This is missing in the metadata)

-- end log --

[harvester info] Output written to /tmp/out/timbuctoo.codemeta.json

[harvester info] <-- Finished processing timbuctoo (https://github.com/HuygensING/timbuctoo) [Mon Apr 22 03:26:32 UTC 2024]

        

Metadata Properties

Version
7.15 (release notes)
Interface types
  • Unknown
Source code repository
 https://github.com/HuygensING/timbuctoo  Stars are an indicator of the popularity of this project on GitHub
Keywords
  • berkeley-db
  • graphql
  • humanities
  • java
  • r2rml
  • rdf
Development Status
  • Active: The project has reached a stable, usable state and is being actively developed.
Issue Tracker (Support)
https://github.com/HuygensING/timbuctoo/issues  The number of open issues on the issue tracker  The number of closes issues on the issue tracker
Documentation
License
Author(s)
  •   Ronald Haentjens Dekker
  •   Pratham Joshi
  •   Meindert Kroese
  •   Martijn Maas
  •   Kerim Meijer
  •   Jauco Noordzij
  •   Walter Ravenek
  •   Henk van den Berg
  •   René van der Ark
Maintainer(s)
  •   Ronald Haentjens Dekker
Contributor(s)
Producer
Programming Language
  • Java
Runtime Platform
  • Java
Software dependencies
  • activation
  • assertj-core
  • bitly-api-client
  • commons-csv
  • commons-lang3
  • dropwizard-assets
  • dropwizard-client
  • dropwizard-core
  • dropwizard-forms
  • dropwizard-testing
  • graphql-java
  • guava
  • hamcrest-library
  • huygens-persistence
  • jackson-dataformat-xml
  • jackson-datatype-guava
  • jackson-datatype-jdk8
  • jaxb-api
  • jaxb-core
  • jaxb-impl
  • je
  • jersey-media-jaxb
  • jsr305
  • junit-jupiter-api
  • junit-vintage-engine
  • juniversalchardet
  • mockito-core
  • mockserver-netty
  • oauth2-oidc-sdk
  • rdf4j-client
  • rdf4j-rio-nquadsnd
  • resourcesync
  • txw2
  • value
  • xmlunit-core
  • xmlunit-matchers
Metadata validation
★ ★ ★ ★ ☆
Created
2012-08-15 14:23:19 +0000
Last modified
2024-03-01 10:25:59 +0100  Last commit (main branch). Gives an indication of project development activity and rough indication of how up-to-date the latest release is.  Number of commits since the last release. Gives an indication of project development activity and rough indication of how up-to-date the latest release is.